Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0338 and Ga0059261_0339 are separated by 81 nucleotides Ga0059261_0339 and Ga0059261_0340 are separated by 14 nucleotides Ga0059261_0340 and Ga0059261_0341 are separated by 85 nucleotides
Ga0059261_0338: Ga0059261_0338 - DNA-directed DNA polymerase III (polc), at 322,630 to 326,112
_0338
Ga0059261_0339: Ga0059261_0339 - Glutathione peroxidase, at 326,194 to 326,673
_0339
Ga0059261_0340: Ga0059261_0340 - Bacterial protein of unknown function (DUF937), at 326,688 to 327,260
_0340
Ga0059261_0341: Ga0059261_0341 - ABC-type antimicrobial peptide transport system, ATPase component, at 327,346 to 328,020
_0341
Position (kb) 326
327 Strain fitness (log2 ratio) -1
0
1 at 326.122 kb on - strand at 326.124 kb on - strand at 326.124 kb on - strand at 326.124 kb on - strand at 326.124 kb on - strand at 326.174 kb on - strand at 326.174 kb on - strand at 326.174 kb on - strand at 326.192 kb on + strand at 326.195 kb on + strand at 326.195 kb on + strand at 326.195 kb on + strand at 326.195 kb on + strand at 326.196 kb on - strand at 326.196 kb on - strand at 326.196 kb on - strand at 326.196 kb on - strand at 326.196 kb on - strand at 326.196 kb on - strand at 326.196 kb on - strand at 326.223 kb on + strand at 326.223 kb on + strand at 326.223 kb on + strand at 326.224 kb on - strand at 326.250 kb on - strand, within Ga0059261_0339 at 326.355 kb on - strand, within Ga0059261_0339 at 326.418 kb on - strand, within Ga0059261_0339 at 326.519 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.549 kb on + strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.550 kb on - strand, within Ga0059261_0339 at 326.609 kb on + strand, within Ga0059261_0339 at 326.609 kb on + strand, within Ga0059261_0339 at 326.609 kb on + strand, within Ga0059261_0339 at 326.609 kb on + strand, within Ga0059261_0339 at 326.609 kb on + strand, within Ga0059261_0339 at 326.610 kb on - strand, within Ga0059261_0339 at 326.878 kb on + strand, within Ga0059261_0340 at 326.878 kb on + strand, within Ga0059261_0340 at 326.878 kb on + strand, within Ga0059261_0340 at 326.878 kb on + strand, within Ga0059261_0340 at 326.879 kb on - strand, within Ga0059261_0340 at 326.879 kb on - strand, within Ga0059261_0340 at 327.314 kb on + strand at 327.314 kb on + strand at 327.314 kb on + strand at 327.314 kb on + strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.315 kb on - strand at 327.316 kb on + strand at 327.316 kb on + strand at 327.317 kb on - strand at 327.317 kb on - strand at 327.317 kb on - strand at 327.317 kb on - strand at 327.317 kb on - strand at 327.317 kb on - strand at 327.342 kb on + strand at 327.342 kb on + strand at 327.342 kb on + strand at 327.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 326,122 - +1.3 326,124 - +0.9 326,124 - -0.1 326,124 - +0.5 326,124 - -0.9 326,174 - -0.1 326,174 - +1.0 326,174 - +0.5 326,192 + -0.5 326,195 + +0.2 326,195 + +0.0 326,195 + +1.2 326,195 + -0.2 326,196 - -0.2 326,196 - +1.3 326,196 - -0.4 326,196 - -0.3 326,196 - -0.1 326,196 - -0.7 326,196 - -0.2 326,223 + -0.4 326,223 + -0.4 326,223 + +0.2 326,224 - -0.8 326,250 - Ga0059261_0339 0.12 -0.1 326,355 - Ga0059261_0339 0.34 +1.1 326,418 - Ga0059261_0339 0.47 -0.1 326,519 + Ga0059261_0339 0.68 -1.1 326,549 + Ga0059261_0339 0.74 +0.0 326,549 + Ga0059261_0339 0.74 +0.4 326,549 + Ga0059261_0339 0.74 +0.2 326,549 + Ga0059261_0339 0.74 +1.3 326,549 + Ga0059261_0339 0.74 +0.2 326,549 + Ga0059261_0339 0.74 -0.3 326,549 + Ga0059261_0339 0.74 +0.2 326,550 - Ga0059261_0339 0.74 -0.8 326,550 - Ga0059261_0339 0.74 +1.2 326,550 - Ga0059261_0339 0.74 +0.4 326,550 - Ga0059261_0339 0.74 +0.4 326,550 - Ga0059261_0339 0.74 +0.0 326,550 - Ga0059261_0339 0.74 +0.4 326,550 - Ga0059261_0339 0.74 +0.5 326,550 - Ga0059261_0339 0.74 +0.4 326,550 - Ga0059261_0339 0.74 +0.1 326,609 + Ga0059261_0339 0.86 +0.1 326,609 + Ga0059261_0339 0.86 +0.5 326,609 + Ga0059261_0339 0.86 -0.6 326,609 + Ga0059261_0339 0.86 +0.3 326,609 + Ga0059261_0339 0.86 +0.8 326,610 - Ga0059261_0339 0.87 +0.1 326,878 + Ga0059261_0340 0.33 +0.4 326,878 + Ga0059261_0340 0.33 +0.4 326,878 + Ga0059261_0340 0.33 +0.3 326,878 + Ga0059261_0340 0.33 +0.1 326,879 - Ga0059261_0340 0.33 +1.1 326,879 - Ga0059261_0340 0.33 +0.2 327,314 + -0.4 327,314 + +0.6 327,314 + -0.2 327,314 + +0.6 327,315 - +0.3 327,315 - -0.3 327,315 - +0.5 327,315 - +0.4 327,315 - -1.0 327,315 - +1.0 327,315 - -0.6 327,315 - -0.3 327,316 + +0.5 327,316 + -0.3 327,317 - -1.0 327,317 - +1.3 327,317 - +0.5 327,317 - +0.2 327,317 - +0.1 327,317 - -1.0 327,342 + +0.9 327,342 + -0.3 327,342 + -0.0 327,343 - +0.5
Or see this region's nucleotide sequence