Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03784

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Chloramphenicol 0.0005 mg/ml
3,950,570	+		CCNA_03782	0.62	+0.6
3,950,586	+		CCNA_03782	0.64	+0.0
3,950,614	+		CCNA_03782	0.69	+1.3
3,950,617	-		CCNA_03782	0.69	-0.7
3,950,636	+		CCNA_03782	0.72	-0.2
3,950,636	+		CCNA_03782	0.72	+0.3
3,950,686	+		CCNA_03782	0.80	-0.6
3,950,698	+		CCNA_03782	0.82	+0.3
3,950,736	+		CCNA_03782	0.89	+0.7
3,950,786	+				-0.4
3,950,794	-				+1.3
3,950,838	+				-2.0
3,950,906	-		CCNA_03783	0.16	-1.0
3,950,911	-		CCNA_03783	0.16	-0.1
3,950,931	+		CCNA_03783	0.19	+0.5
3,950,939	-		CCNA_03783	0.21	+0.9
3,950,973	+		CCNA_03783	0.26	-0.4
3,950,976	-		CCNA_03783	0.26	-0.1
3,951,037	+		CCNA_03783	0.35	-0.1
3,951,068	+		CCNA_03783	0.40	+0.4
3,951,128	+		CCNA_03783	0.49	-0.6
3,951,131	-		CCNA_03783	0.49	-0.8
3,951,150	+		CCNA_03783	0.52	+0.5
3,951,170	+		CCNA_03783	0.55	+0.0
3,951,170	+		CCNA_03783	0.55	-1.4
3,951,170	+		CCNA_03783	0.55	+0.0
3,951,170	+				+0.9
3,951,184	-		CCNA_03783	0.57	-0.1
3,951,219	+		CCNA_03783	0.63	-1.2
3,951,276	+		CCNA_03783	0.71	-0.3
3,951,284	-		CCNA_03783	0.72	-0.4
3,951,302	+		CCNA_03783	0.75	+1.0
3,951,365	+		CCNA_03783	0.85	-0.7
3,951,365	+		CCNA_03783	0.85	-1.9
3,951,365	+		CCNA_03783	0.85	+0.0
3,951,373	-		CCNA_03783	0.86	+0.3
3,951,373	-		CCNA_03783	0.86	+0.9
3,951,381	+		CCNA_03783	0.87	+0.5
3,951,456	+				+0.5
3,951,456	+				+0.3
3,951,456	+				+0.1
3,951,461	+				+0.1
3,951,461	+				+0.4
3,951,509	+				+0.1
3,951,514	+				-1.7
3,951,515	-				-1.1
3,951,517	-				-1.4
3,951,522	+				-0.5
3,951,530	+				-0.8
3,951,536	+				+0.3
3,951,546	+				+0.5
3,951,546	+				+1.9
3,951,580	+				-1.4
3,951,580	+				-1.0
3,951,580	+				-0.4
3,951,580	+				+0.2
3,951,580	+				-1.8
3,951,580	+				+3.5
3,951,588	-				+0.0
3,951,588	-				+0.2
3,951,588	-				-0.5
3,951,609	+				-0.5
3,951,612	-				-1.2
3,951,632	-		CCNA_03784	0.12	+0.0
3,951,702	-		CCNA_03784	0.20	-0.4
3,951,707	-		CCNA_03784	0.20	+0.4
3,951,729	-		CCNA_03784	0.23	-1.2
3,951,780	+		CCNA_03784	0.29	-0.4
3,951,799	+		CCNA_03784	0.31	-1.5
3,951,799	+		CCNA_03784	0.31	-0.3
3,951,799	+		CCNA_03784	0.31	-0.9
3,951,807	-		CCNA_03784	0.32	-0.1
3,951,807	-		CCNA_03784	0.32	-1.1
3,951,807	-		CCNA_03784	0.32	-0.4
3,951,868	-		CCNA_03784	0.38	-0.2
3,951,890	-		CCNA_03784	0.41	-1.9
3,951,908	+		CCNA_03784	0.43	+0.0
3,951,957	-		CCNA_03784	0.48	-0.4
3,951,963	-		CCNA_03784	0.49	-1.0
3,951,982	+		CCNA_03784	0.51	-0.9
3,951,983	-		CCNA_03784	0.51	+0.3
3,952,031	-		CCNA_03784	0.57	-0.7
3,952,041	-		CCNA_03784	0.58	-1.8
3,952,071	+		CCNA_03784	0.61	+0.5
3,952,121	+		CCNA_03784	0.67	-2.5
3,952,129	-		CCNA_03784	0.68	-0.6
3,952,166	-		CCNA_03784	0.72	-0.4
3,952,184	-		CCNA_03784	0.74	-0.5
3,952,197	+		CCNA_03784	0.75	-1.0
3,952,200	+		CCNA_03784	0.76	+0.8
3,952,200	+		CCNA_03784	0.76	-1.1
3,952,200	+		CCNA_03784	0.76	-0.2
3,952,208	-		CCNA_03784	0.76	-0.7
3,952,255	+		CCNA_03784	0.82	+0.2
3,952,258	-		CCNA_03784	0.82	-0.8
3,952,302	+		CCNA_03784	0.87	+0.3
3,952,310	-		CCNA_03784	0.88	-1.2
3,952,322	-		CCNA_03784	0.89	+0.5
3,952,333	-				-0.2
3,952,370	-				-0.1
3,952,375	-				-1.1
3,952,405	-				-0.5
3,952,412	-				+0.7
3,952,429	+				+1.5
3,952,436	+				+0.2
3,952,496	+				+0.7
3,952,504	-				-0.2
3,952,594	-				-2.5
3,952,616	+				-0.6
3,952,620	+				-1.6
3,952,630	+				+0.0
3,952,630	+				-0.7
3,952,630	+				+0.5
3,952,630	+				-0.4
3,952,631	-				-1.5
3,952,669	+				-1.3
3,952,717	+		CCNA_03997	0.12	-0.6
3,952,725	-		CCNA_03997	0.13	-0.7
3,952,725	-		CCNA_03997	0.13	-0.9
3,952,725	-		CCNA_03997	0.13	-1.1
3,952,797	+		CCNA_03997	0.24	+0.3
3,952,807	+		CCNA_03997	0.25	-0.1
3,952,815	-		CCNA_03997	0.26	-0.4
3,952,840	+		CCNA_03997	0.30	+0.8
3,952,887	+		CCNA_03997	0.37	-1.4
3,952,887	+		CCNA_03997	0.37	-0.3
3,952,895	-		CCNA_03997	0.38	-2.1
3,952,907	+		CCNA_03997	0.40	-0.5
3,952,915	-		CCNA_03997	0.41	-1.8
3,952,927	+		CCNA_03997	0.43	-1.3
3,952,930	-		CCNA_03997	0.44	-0.9
3,952,930	-		CCNA_03997	0.44	+0.6
3,952,930	-		CCNA_03997	0.44	-0.6
3,952,944	+		CCNA_03997	0.46	+2.2
3,952,977	-		CCNA_03997	0.51	+0.8
3,952,980	+		CCNA_03997	0.51	+0.6
3,952,980	+		CCNA_03997	0.51	-0.2
3,952,980	+		CCNA_03997	0.51	-0.8
3,952,988	-		CCNA_03997	0.52	-0.6
3,952,989	-		CCNA_03997	0.53	+0.2
3,952,989	-		CCNA_03997	0.53	+0.9
3,953,045	-		CCNA_03997	0.61	-0.6
3,953,061	+		CCNA_03997	0.63	-1.6
3,953,061	+		CCNA_03997	0.63	-0.1
3,953,069	-		CCNA_03997	0.65	+1.0
3,953,104	+		CCNA_03997	0.70	-0.2
3,953,133	+		CCNA_03997	0.74	+0.1
3,953,139	-		CCNA_03997	0.75	+0.0
3,953,142	+		CCNA_03997	0.76	+0.8
3,953,148	+		CCNA_03997	0.77	+0.2
3,953,156	-				+0.7
3,953,158	+		CCNA_03997	0.78	+0.1
3,953,158	+		CCNA_03997	0.78	-0.4
3,953,166	-		CCNA_03997	0.79	-1.5
3,953,166	-		CCNA_03997	0.79	+0.3
3,953,179	+		CCNA_03997	0.81	-0.2
3,953,187	-		CCNA_03997	0.83	-1.1
3,953,187	-		CCNA_03997	0.83	-0.3
3,953,189	-		CCNA_03997	0.83	-0.6
3,953,254	+				+0.1
3,953,262	-				+0.9
3,953,262	-				+0.1
3,953,262	-				-1.8
3,953,262	-				-1.9
3,953,262	-				-1.2
3,953,268	+				+1.2
3,953,275	+				-0.1
3,953,277	-				-0.2
3,953,287	+				-0.5
3,953,296	+				+0.2
3,953,296	+				-0.2
3,953,328	+				-0.4
3,953,330	+				-1.4
3,953,342	+				-0.4
3,953,351	+				+0.0
3,953,395	-				+0.5