Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02233

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Chloramphenicol 0.0005 mg/ml
2,381,359	+		CCNA_02232	0.64	-0.5
2,381,463	+		CCNA_02232	0.69	+0.1
2,381,471	-		CCNA_02232	0.69	+0.6
2,381,471	-		CCNA_02232	0.69	-0.6
2,381,471	-		CCNA_02232	0.69	-1.1
2,381,505	+		CCNA_02232	0.70	+0.1
2,381,519	-		CCNA_02232	0.71	-0.1
2,381,541	-		CCNA_02232	0.72	-0.6
2,381,560	+		CCNA_02232	0.73	+1.1
2,381,575	+		CCNA_02232	0.73	-0.9
2,381,594	+		CCNA_02232	0.74	-0.0
2,381,623	+		CCNA_02232	0.75	-0.1
2,381,623	+		CCNA_02232	0.75	-1.4
2,381,632	+		CCNA_02232	0.76	-0.2
2,381,632	+		CCNA_02232	0.76	+0.3
2,381,632	+		CCNA_02232	0.76	-0.4
2,381,632	+		CCNA_02232	0.76	-1.0
2,381,640	-		CCNA_02232	0.76	-1.0
2,381,640	-		CCNA_02232	0.76	-1.2
2,381,640	-		CCNA_02232	0.76	-2.5
2,381,640	-		CCNA_02232	0.76	-1.6
2,381,653	+		CCNA_02232	0.77	+0.1
2,381,661	-		CCNA_02232	0.77	-0.9
2,381,669	-		CCNA_02232	0.77	-0.6
2,381,682	+		CCNA_02232	0.78	-1.0
2,381,736	+		CCNA_02232	0.80	+0.6
2,381,736	-		CCNA_02232	0.80	-1.1
2,381,752	+		CCNA_02232	0.81	+0.9
2,381,761	-		CCNA_02232	0.81	-1.5
2,381,818	-		CCNA_02232	0.84	-0.3
2,381,827	+		CCNA_02232	0.84	-1.6
2,381,827	+		CCNA_02232	0.84	-1.0
2,381,827	+		CCNA_02232	0.84	-0.5
2,381,827	+		CCNA_02232	0.84	-0.5
2,381,828	+		CCNA_02232	0.84	+2.1
2,381,829	-		CCNA_02232	0.84	+0.5
2,381,835	-		CCNA_02232	0.85	-0.0
2,381,835	-		CCNA_02232	0.85	-1.3
2,381,835	-		CCNA_02232	0.85	-0.4
2,381,868	-		CCNA_02232	0.86	-0.9
2,381,915	+		CCNA_02232	0.88	+0.6
2,381,932	+		CCNA_02232	0.89	-1.0
2,381,966	-				-1.0
2,381,966	-				-0.2
2,382,019	-				+3.5
2,382,021	+				+0.6
2,382,051	+				+0.1
2,382,056	+				-0.9
2,382,059	-				-1.7
2,382,103	+				+0.6
2,382,103	+				-2.7
2,382,103	+				-1.7
2,382,111	-				+1.0
2,382,111	-				-1.8
2,382,111	-				-0.5
2,382,111	-				-0.9
2,382,128	+				-0.5
2,382,128	+				+0.3
2,382,128	+				-1.7
2,382,128	+				+2.1
2,382,128	+				-1.6
2,382,128	+				-0.2
2,382,128	+				+0.2
2,382,128	+				-0.9
2,382,128	+				+0.5
2,382,128	+				-1.1
2,382,136	-				-1.0
2,382,136	-				-0.9
2,382,136	-				+1.0
2,382,136	-				-0.5
2,382,136	-				+0.1
2,382,136	-				-2.0
2,382,136	-				+0.5
2,382,136	-				-1.5
2,382,136	-				-3.0
2,382,136	-				-1.3
2,382,136	-				-0.1
2,382,136	-				-1.7
2,382,136	-				-1.0
2,382,137	+				-2.9
2,382,145	-				-0.8
2,382,145	-				+0.4
2,382,160	+				-1.0
2,382,166	+				-0.6
2,382,167	-				-0.3
2,382,167	-				-0.9
2,382,168	-				-1.3
2,382,168	-				+0.4
2,382,192	-				-0.6
2,382,240	-				+0.1
2,382,264	+				-1.0
2,382,264	+				-1.9
2,382,264	+				+1.1
2,382,264	+				-0.1
2,382,264	+				-1.0
2,382,272	-				-0.0
2,382,272	-				-2.2
2,382,272	-				+0.1
2,382,272	-				+0.9
2,382,273	-				-0.6
2,382,304	-				-1.4
2,382,304	-				+0.4
2,382,342	-				+1.0
2,382,423	-				-1.5
2,382,445	+		CCNA_02233	0.12	-0.9
2,382,451	+		CCNA_02233	0.13	-0.6
2,382,459	-		CCNA_02233	0.14	-0.1
2,382,474	+		CCNA_02233	0.16	-1.0
2,382,521	-		CCNA_02233	0.22	-0.3
2,382,527	+		CCNA_02233	0.23	-1.1
2,382,561	-		CCNA_02233	0.28	+0.3
2,382,576	-		CCNA_02233	0.30	-1.2
2,382,607	-		CCNA_02233	0.34	+0.1
2,382,609	+		CCNA_02233	0.34	+0.3
2,382,617	-		CCNA_02233	0.35	+1.0
2,382,630	-		CCNA_02233	0.37	-2.5
2,382,632	+		CCNA_02233	0.37	-2.0
2,382,634	+		CCNA_02233	0.37	-0.9
2,382,642	-		CCNA_02233	0.38	-1.0
2,382,659	+		CCNA_02233	0.40	-1.1
2,382,659	+		CCNA_02233	0.40	+0.9
2,382,664	+		CCNA_02233	0.41	+0.1
2,382,667	-		CCNA_02233	0.41	-1.3
2,382,667	-		CCNA_02233	0.41	-1.2
2,382,669	+		CCNA_02233	0.42	+0.9
2,382,677	-		CCNA_02233	0.43	+0.6
2,382,738	-		CCNA_02233	0.51	-1.2
2,382,754	+		CCNA_02233	0.53	-0.0
2,382,762	-		CCNA_02233	0.54	-2.5
2,382,765	+		CCNA_02233	0.54	-0.2
2,382,769	+		CCNA_02233	0.55	+0.5
2,382,778	-		CCNA_02233	0.56	-1.1
2,382,788	-		CCNA_02233	0.57	-1.5
2,382,805	+		CCNA_02233	0.59	-1.5
2,382,805	-		CCNA_02233	0.59	+0.5
2,382,826	-		CCNA_02233	0.62	-0.5
2,382,831	-		CCNA_02233	0.63	+3.0
2,382,837	-		CCNA_02233	0.64	-1.2
2,382,841	+		CCNA_02233	0.64	-0.8
2,382,891	+		CCNA_02233	0.71	-1.0
2,382,891	+		CCNA_02233	0.71	-1.6
2,382,896	+		CCNA_02233	0.71	-1.0
2,382,899	-		CCNA_02233	0.72	-0.5
2,382,899	-		CCNA_02233	0.72	-2.0
2,382,899	-		CCNA_02233	0.72	+0.6
2,382,899	-		CCNA_02233	0.72	-1.0
2,382,910	+		CCNA_02233	0.73	+1.1
2,382,972	+		CCNA_02233	0.81	-1.8
2,383,056	+				+0.1
2,383,064	-				+0.3
2,383,070	-				-1.0
2,383,070	-				-0.1
2,383,071	-				-1.4
2,383,110	-				-2.1
2,383,111	+				+0.6
2,383,139	+				-1.9
2,383,144	+				-0.7
2,383,147	-				-1.6
2,383,147	-				-0.1
2,383,166	-		CCNA_02234	0.13	+0.2
2,383,169	+		CCNA_02234	0.14	+1.1
2,383,177	-		CCNA_02234	0.16	-0.4
2,383,196	+		CCNA_02234	0.22	-0.8
2,383,204	+		CCNA_02234	0.24	-1.4
2,383,221	-		CCNA_02234	0.29	-1.3
2,383,273	-		CCNA_02234	0.45	-0.6
2,383,288	-		CCNA_02234	0.49	-0.9
2,383,288	-		CCNA_02234	0.49	+0.9
2,383,312	+		CCNA_02234	0.57	-0.2
2,383,316	+		CCNA_02234	0.58	-1.5
2,383,398	-		CCNA_02234	0.82	-0.6
2,383,398	-		CCNA_02234	0.82	-0.5
2,383,430	-				+0.1
2,383,430	-				-0.1
2,383,431	-				-1.6
2,383,431	-				-2.0
2,383,445	+				+0.5
2,383,452	+				-1.6
2,383,484	+				-2.2
2,383,484	+				+1.3
2,383,484	+				-0.9
2,383,484	+				-0.6
2,383,490	+				-0.9
2,383,492	-				-0.5
2,383,492	-				-1.8
2,383,492	-				-2.5
2,383,562	+				-2.2
2,383,580	-				-0.1
2,383,580	-				-0.3
2,383,587	+				-0.3
2,383,619	+				+0.9
2,383,633	-				-0.9
2,383,668	+				-1.1
2,383,672	-				-0.2
2,383,698	+				-1.6
2,383,867	+		CCNA_02235	0.17	+0.1
2,383,867	-		CCNA_02235	0.17	-0.2
2,383,880	-		CCNA_02235	0.18	+1.1
2,383,897	+		CCNA_02235	0.19	-1.9
2,383,902	+		CCNA_02235	0.19	-0.5
2,383,905	-		CCNA_02235	0.19	-0.1
2,383,905	-		CCNA_02235	0.19	-0.8
2,383,910	-		CCNA_02235	0.20	-0.0
2,384,001	+		CCNA_02235	0.26	-0.9
2,384,001	+		CCNA_02235	0.26	-2.0
2,384,009	-		CCNA_02235	0.27	-0.5
2,384,061	-		CCNA_02235	0.31	-0.7
2,384,092	+		CCNA_02235	0.33	-1.9
2,384,092	+		CCNA_02235	0.33	+1.1