Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01559

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Chloramphenicol 0.0005 mg/ml
1,674,977	+				-1.1
1,675,054	-		CCNA_01558	0.11	-1.1
1,675,056	+		CCNA_01558	0.11	-0.7
1,675,056	+		CCNA_01558	0.11	-2.6
1,675,056	+		CCNA_01558	0.11	+0.3
1,675,056	+		CCNA_01558	0.11	+0.8
1,675,056	+		CCNA_01558	0.11	+0.8
1,675,082	+		CCNA_01558	0.14	+0.1
1,675,094	-		CCNA_01558	0.15	-2.4
1,675,124	+		CCNA_01558	0.19	-1.1
1,675,133	-		CCNA_01558	0.20	+0.6
1,675,204	+		CCNA_01558	0.29	+0.4
1,675,236	+		CCNA_01558	0.32	+0.1
1,675,294	-		CCNA_01558	0.39	-1.1
1,675,347	-		CCNA_01558	0.46	+0.2
1,675,349	-		CCNA_01558	0.46	-0.7
1,675,400	-		CCNA_01558	0.52	-1.6
1,675,436	+		CCNA_01558	0.56	-0.7
1,675,459	-		CCNA_01558	0.59	-0.8
1,675,503	+		CCNA_01558	0.64	-0.3
1,675,512	-		CCNA_01558	0.65	+0.2
1,675,514	+		CCNA_01558	0.65	+0.2
1,675,539	-		CCNA_01558	0.68	-1.5
1,675,547	+		CCNA_01558	0.69	-0.3
1,675,611	+		CCNA_01558	0.77	-1.5
1,675,620	-		CCNA_01558	0.78	+0.1
1,675,620	-		CCNA_01558	0.78	-0.6
1,675,644	-		CCNA_01558	0.81	-0.8
1,675,672	+		CCNA_01558	0.84	-0.2
1,675,705	+		CCNA_01558	0.88	-0.3
1,675,705	+		CCNA_01558	0.88	+0.1
1,675,705	+		CCNA_01558	0.88	+0.1
1,675,705	+		CCNA_01558	0.88	+0.0
1,675,705	+		CCNA_01558	0.88	+0.8
1,675,705	+		CCNA_01558	0.88	+0.3
1,675,705	+		CCNA_01558	0.88	-0.1
1,675,713	-		CCNA_01558	0.89	+1.5
1,675,723	-				+0.3
1,675,726	+				+0.6
1,675,726	+				+0.7
1,675,734	-				-1.5
1,675,734	-				-0.1
1,675,734	-				+0.5
1,675,737	+				+0.5
1,675,771	-				-0.1
1,675,802	-				-1.1
1,675,819	-				-1.4
1,675,846	+				-1.1
1,675,864	+				-0.8
1,675,905	-				+0.3
1,675,984	+				+1.8
1,676,070	-		CCNA_01559	0.14	-0.5
1,676,087	-		CCNA_01559	0.17	-1.2
1,676,116	+		CCNA_01559	0.20	-0.5
1,676,152	-		CCNA_01559	0.25	-0.9
1,676,169	+		CCNA_01559	0.27	-1.8
1,676,220	-		CCNA_01559	0.34	-0.7
1,676,263	+				+3.2
1,676,311	-		CCNA_01559	0.46	-1.3
1,676,311	-		CCNA_01559	0.46	-0.9
1,676,312	-		CCNA_01559	0.46	-0.3
1,676,326	+		CCNA_01559	0.48	+1.0
1,676,326	+		CCNA_01559	0.48	-0.6
1,676,331	+		CCNA_01559	0.48	-0.2
1,676,339	-		CCNA_01559	0.49	-0.4
1,676,348	+		CCNA_01559	0.51	+0.3
1,676,348	+		CCNA_01559	0.51	-0.0
1,676,376	+		CCNA_01559	0.54	-0.7
1,676,376	+		CCNA_01559	0.54	+0.5
1,676,376	+		CCNA_01559	0.54	-2.4
1,676,383	+		CCNA_01559	0.55	+0.1
1,676,416	-		CCNA_01559	0.59	-0.5
1,676,416	-		CCNA_01559	0.59	-1.5
1,676,433	+		CCNA_01559	0.62	-1.2
1,676,550	+		CCNA_01559	0.77	-1.0
1,676,557	+		CCNA_01559	0.78	+0.3
1,676,569	+		CCNA_01559	0.79	-1.4
1,676,569	+		CCNA_01559	0.79	+0.9
1,676,577	-		CCNA_01559	0.80	-0.9
1,676,687	+				-1.3
1,676,794	+				-0.7
1,676,873	-				-1.1
1,676,873	-				+0.1
1,676,900	+				+0.6
1,676,900	+				+0.1
1,676,921	+				+1.0
1,676,929	-				-0.5
1,677,014	+				+0.8
1,677,057	+				+0.6
1,677,079	+				-0.4
1,677,114	+				-0.6
1,677,114	+				-0.1
1,677,122	-				+0.3
1,677,134	-				+0.7
1,677,134	-				-0.7
1,677,159	+				-1.4
1,677,162	-				+0.7
1,677,191	-		CCNA_01560	0.10	-0.1
1,677,236	-		CCNA_01560	0.12	+0.7
1,677,265	-		CCNA_01560	0.13	-0.0
1,677,275	-		CCNA_01560	0.13	+0.2
1,677,283	-		CCNA_01560	0.14	-0.9
1,677,318	+		CCNA_01560	0.15	-0.2
1,677,344	-		CCNA_01560	0.16	-0.4
1,677,367	-		CCNA_01560	0.17	-0.4
1,677,462	-		CCNA_01560	0.20	+0.4
1,677,463	+		CCNA_01560	0.20	-0.9
1,677,478	+		CCNA_01560	0.21	-1.1
1,677,478	+		CCNA_01560	0.21	-1.1
1,677,496	+		CCNA_01560	0.21	-0.9
1,677,496	+		CCNA_01560	0.21	+0.3
1,677,496	+		CCNA_01560	0.21	+0.9
1,677,509	-		CCNA_01560	0.22	-1.4
1,677,519	+		CCNA_01560	0.22	+0.2
1,677,519	+		CCNA_01560	0.22	-0.9
1,677,534	+		CCNA_01560	0.23	+1.2
1,677,606	+		CCNA_01560	0.25	-0.5
1,677,671	+		CCNA_01560	0.28	-0.7