Experiment: PYE with Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01376 and CCNA_R0033 are separated by 218 nucleotides CCNA_R0033 and CCNA_R0034 are separated by 135 nucleotides CCNA_R0034 and CCNA_01377 are separated by 32 nucleotides CCNA_01377 and CCNA_01378 are separated by 295 nucleotides CCNA_01378 and CCNA_01379 are separated by 124 nucleotides
CCNA_01376: CCNA_01376 - glutathione S-transferase, at 1,490,853 to 1,491,557
_01376
CCNA_R0033: CCNA_R0033 - tRNA-Asn, at 1,491,776 to 1,491,850
_R0033
CCNA_R0034: CCNA_R0034 - tRNA-Asn, at 1,491,986 to 1,492,060
_R0034
CCNA_01377: CCNA_01377 - hypothetical protein, at 1,492,093 to 1,492,239
_01377
CCNA_01378: CCNA_01378 - protein-L-isoaspartate O-methyltransferase, at 1,492,535 to 1,493,107
_01378
CCNA_01379: CCNA_01379 - type I secretion outer membrane protein rsaFb, at 1,493,232 to 1,494,683
_01379
Position (kb)
1492
1493 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1491.113 kb on + strand, within CCNA_01376 at 1491.113 kb on + strand, within CCNA_01376 at 1491.121 kb on - strand, within CCNA_01376 at 1491.169 kb on - strand, within CCNA_01376 at 1491.200 kb on + strand, within CCNA_01376 at 1491.207 kb on + strand, within CCNA_01376 at 1491.219 kb on - strand, within CCNA_01376 at 1491.287 kb on + strand, within CCNA_01376 at 1491.328 kb on - strand, within CCNA_01376 at 1491.328 kb on - strand, within CCNA_01376 at 1491.364 kb on + strand, within CCNA_01376 at 1491.374 kb on + strand, within CCNA_01376 at 1491.383 kb on + strand, within CCNA_01376 at 1491.383 kb on + strand, within CCNA_01376 at 1491.383 kb on + strand, within CCNA_01376 at 1491.383 kb on + strand, within CCNA_01376 at 1491.383 kb on + strand, within CCNA_01376 at 1491.383 kb on + strand, within CCNA_01376 at 1491.383 kb on + strand, within CCNA_01376 at 1491.384 kb on + strand, within CCNA_01376 at 1491.384 kb on + strand, within CCNA_01376 at 1491.391 kb on - strand, within CCNA_01376 at 1491.391 kb on - strand, within CCNA_01376 at 1491.391 kb on - strand, within CCNA_01376 at 1491.391 kb on - strand, within CCNA_01376 at 1491.420 kb on + strand, within CCNA_01376 at 1491.420 kb on + strand, within CCNA_01376 at 1491.428 kb on - strand, within CCNA_01376 at 1491.471 kb on + strand, within CCNA_01376 at 1491.534 kb on + strand at 1491.542 kb on - strand at 1491.556 kb on + strand at 1491.559 kb on - strand at 1491.572 kb on - strand at 1491.573 kb on + strand at 1491.573 kb on + strand at 1491.642 kb on + strand at 1491.642 kb on + strand at 1491.655 kb on + strand at 1491.670 kb on + strand at 1491.678 kb on - strand at 1491.992 kb on - strand at 1492.089 kb on + strand at 1492.191 kb on + strand, within CCNA_01377 at 1492.191 kb on + strand, within CCNA_01377 at 1492.191 kb on + strand, within CCNA_01377 at 1492.191 kb on + strand, within CCNA_01377 at 1492.199 kb on - strand, within CCNA_01377 at 1492.199 kb on - strand, within CCNA_01377 at 1492.199 kb on - strand, within CCNA_01377 at 1492.199 kb on - strand, within CCNA_01377 at 1492.199 kb on - strand, within CCNA_01377 at 1492.206 kb on + strand, within CCNA_01377 at 1492.214 kb on - strand, within CCNA_01377 at 1492.214 kb on - strand, within CCNA_01377 at 1492.247 kb on + strand at 1492.312 kb on - strand at 1492.312 kb on - strand at 1492.312 kb on - strand at 1492.352 kb on + strand at 1492.422 kb on - strand at 1492.451 kb on + strand at 1492.459 kb on - strand at 1492.465 kb on - strand at 1492.494 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.502 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.521 kb on - strand at 1492.542 kb on - strand at 1493.093 kb on + strand at 1493.100 kb on + strand at 1493.101 kb on - strand at 1493.114 kb on + strand at 1493.126 kb on + strand at 1493.189 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chloramphenicol 0.0005 mg/ml remove 1,491,113 + CCNA_01376 0.37 -0.1 1,491,113 + CCNA_01376 0.37 -0.0 1,491,121 - CCNA_01376 0.38 -0.4 1,491,169 - CCNA_01376 0.45 -1.0 1,491,200 + CCNA_01376 0.49 +0.3 1,491,207 + CCNA_01376 0.50 -0.3 1,491,219 - CCNA_01376 0.52 -1.8 1,491,287 + CCNA_01376 0.62 +0.6 1,491,328 - CCNA_01376 0.67 -0.9 1,491,328 - CCNA_01376 0.67 -1.3 1,491,364 + CCNA_01376 0.72 +0.8 1,491,374 + CCNA_01376 0.74 +0.7 1,491,383 + CCNA_01376 0.75 +0.2 1,491,383 + CCNA_01376 0.75 -0.3 1,491,383 + CCNA_01376 0.75 +1.4 1,491,383 + CCNA_01376 0.75 +1.9 1,491,383 + CCNA_01376 0.75 -0.1 1,491,383 + CCNA_01376 0.75 +0.3 1,491,383 + CCNA_01376 0.75 -0.4 1,491,384 + CCNA_01376 0.75 -1.3 1,491,384 + CCNA_01376 0.75 -0.0 1,491,391 - CCNA_01376 0.76 +0.5 1,491,391 - CCNA_01376 0.76 -0.7 1,491,391 - CCNA_01376 0.76 -0.6 1,491,391 - CCNA_01376 0.76 -2.7 1,491,420 + CCNA_01376 0.80 +0.5 1,491,420 + CCNA_01376 0.80 +1.7 1,491,428 - CCNA_01376 0.82 -1.6 1,491,471 + CCNA_01376 0.88 +1.3 1,491,534 + +2.5 1,491,542 - +0.9 1,491,556 + +0.3 1,491,559 - -0.6 1,491,572 - -2.9 1,491,573 + +0.6 1,491,573 + +1.0 1,491,642 + +0.7 1,491,642 + +0.5 1,491,655 + +0.5 1,491,670 + +0.6 1,491,678 - +0.1 1,491,992 - +0.1 1,492,089 + +0.4 1,492,191 + CCNA_01377 0.67 +0.5 1,492,191 + CCNA_01377 0.67 -2.6 1,492,191 + CCNA_01377 0.67 -1.2 1,492,191 + CCNA_01377 0.67 -2.1 1,492,199 - CCNA_01377 0.72 -1.8 1,492,199 - CCNA_01377 0.72 -0.8 1,492,199 - CCNA_01377 0.72 +0.7 1,492,199 - CCNA_01377 0.72 -2.2 1,492,199 - CCNA_01377 0.72 -0.2 1,492,206 + CCNA_01377 0.77 -1.1 1,492,214 - CCNA_01377 0.82 +0.7 1,492,214 - CCNA_01377 0.82 -0.0 1,492,247 + +0.2 1,492,312 - -0.0 1,492,312 - -0.6 1,492,312 - +0.5 1,492,352 + +0.6 1,492,422 - -0.8 1,492,451 + -0.4 1,492,459 - -2.1 1,492,465 - +1.1 1,492,494 + -0.1 1,492,495 + -0.1 1,492,495 + -0.6 1,492,495 + -0.7 1,492,495 + -0.9 1,492,502 - +0.7 1,492,503 - +0.3 1,492,503 - -0.6 1,492,503 - -1.8 1,492,503 - +0.5 1,492,503 - -1.7 1,492,503 - -0.6 1,492,503 - +0.1 1,492,521 - -0.2 1,492,542 - +1.7 1,493,093 + +1.7 1,493,100 + +0.9 1,493,101 - +1.1 1,493,114 + +0.6 1,493,126 + +1.1 1,493,189 + +0.9
Or see this region's nucleotide sequence