Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01246

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Chloramphenicol 0.0005 mg/ml
1,372,429	+				+0.3
1,372,437	-				-0.8
1,372,437	-				+0.6
1,372,437	-				-0.2
1,372,439	+				+0.3
1,372,447	+				-0.2
1,372,447	-				+1.7
1,372,455	-				+0.6
1,372,455	-				-0.8
1,372,455	-				+2.7
1,372,465	-				-2.7
1,372,550	+				-1.5
1,372,550	-				-2.3
1,372,575	+				-1.4
1,372,576	+				-0.9
1,372,617	+				-0.6
1,372,625	-				+0.7
1,372,627	+				-1.4
1,372,627	+				-0.3
1,372,627	+				-0.3
1,372,635	-				-1.5
1,372,674	+				-0.6
1,372,745	-		CCNA_01245	0.15	-0.4
1,372,766	-		CCNA_01245	0.17	-1.6
1,372,785	+		CCNA_01245	0.20	+0.3
1,372,820	+		CCNA_01245	0.24	+1.1
1,372,830	-		CCNA_01245	0.25	+0.8
1,372,833	-		CCNA_01245	0.26	-1.0
1,372,849	+		CCNA_01245	0.28	+0.1
1,372,920	-		CCNA_01245	0.37	-0.4
1,372,930	+		CCNA_01245	0.38	-0.1
1,372,938	-		CCNA_01245	0.39	-0.2
1,372,974	+		CCNA_01245	0.43	+0.1
1,373,043	-		CCNA_01245	0.52	-0.8
1,373,063	-		CCNA_01245	0.55	-0.9
1,373,082	-		CCNA_01245	0.57	+0.6
1,373,107	-		CCNA_01245	0.60	-1.0
1,373,129	+		CCNA_01245	0.63	+0.0
1,373,129	+		CCNA_01245	0.63	-0.4
1,373,129	+		CCNA_01245	0.63	-2.3
1,373,129	+		CCNA_01245	0.63	-0.5
1,373,129	-		CCNA_01245	0.63	+1.4
1,373,136	-		CCNA_01245	0.64	-2.2
1,373,137	-		CCNA_01245	0.64	-0.8
1,373,137	-		CCNA_01245	0.64	-1.3
1,373,137	-		CCNA_01245	0.64	-1.8
1,373,137	-		CCNA_01245	0.64	-0.8
1,373,137	-		CCNA_01245	0.64	-0.5
1,373,137	-		CCNA_01245	0.64	-0.4
1,373,137	-		CCNA_01245	0.64	-0.1
1,373,137	-		CCNA_01245	0.64	+0.0
1,373,137	-		CCNA_01245	0.64	+1.3
1,373,137	-		CCNA_01245	0.64	-1.4
1,373,137	-		CCNA_01245	0.64	-1.3
1,373,321	+		CCNA_01245	0.87	-1.1
1,373,329	-		CCNA_01245	0.88	-0.7
1,373,338	+		CCNA_01245	0.89	-0.1
1,373,364	-				-2.6
1,373,366	-				-0.0
1,373,383	-				-2.3
1,373,386	+				-0.7
1,373,386	+				+0.9
1,373,400	-				-0.6
1,373,408	+				-1.2
1,373,408	+				+0.7
1,373,416	-				-2.0
1,373,460	-				+1.3
1,373,491	+				+0.7
1,373,499	-				+0.7
1,373,519	-		CCNA_01246	0.10	+0.4
1,373,529	+		CCNA_01246	0.11	-1.3
1,373,533	+		CCNA_01246	0.12	-0.5
1,373,584	+		CCNA_01246	0.17	+0.3
1,373,590	+		CCNA_01246	0.18	-0.6
1,373,620	-		CCNA_01246	0.21	+1.2
1,373,622	+		CCNA_01246	0.21	+2.3
1,373,637	+		CCNA_01246	0.23	+0.1
1,373,637	+		CCNA_01246	0.23	-0.7
1,373,640	-		CCNA_01246	0.23	+1.5
1,373,645	-		CCNA_01246	0.24	-1.7
1,373,686	-		CCNA_01246	0.28	+0.8
1,373,711	+		CCNA_01246	0.31	+0.1
1,373,938	+		CCNA_01246	0.56	+0.7
1,373,967	-		CCNA_01246	0.59	-0.7
1,373,984	+		CCNA_01246	0.61	-0.9
1,373,992	-		CCNA_01246	0.62	+2.1
1,373,992	-		CCNA_01246	0.62	-0.6
1,374,030	+		CCNA_01246	0.66	-1.5
1,374,040	+		CCNA_01246	0.67	+0.4
1,374,048	-		CCNA_01246	0.68	-1.0
1,374,048	-		CCNA_01246	0.68	-0.4
1,374,048	-		CCNA_01246	0.68	+0.8
1,374,053	-		CCNA_01246	0.69	-0.0
1,374,103	+		CCNA_01246	0.74	+0.3
1,374,142	-		CCNA_01246	0.78	+0.0
1,374,160	+		CCNA_01246	0.80	+1.3
1,374,165	+		CCNA_01246	0.81	+1.0
1,374,165	+		CCNA_01246	0.81	-0.7
1,374,165	+		CCNA_01246	0.81	-1.5
1,374,165	+		CCNA_01246	0.81	+1.7
1,374,165	+		CCNA_01246	0.81	+0.5
1,374,165	+		CCNA_01246	0.81	-0.0
1,374,173	-		CCNA_01246	0.82	+0.3
1,374,173	-		CCNA_01246	0.82	+1.7
1,374,173	-		CCNA_01246	0.82	+0.9
1,374,173	-		CCNA_01246	0.82	-0.1
1,374,173	-		CCNA_01246	0.82	+0.6
1,374,173	-		CCNA_01246	0.82	+1.0
1,374,194	+		CCNA_01246	0.84	-1.8
1,374,229	-		CCNA_01246	0.88	+1.3
1,374,267	+				+1.4
1,374,275	-				+0.6
1,374,275	-				+1.8
1,374,275	-				+0.6
1,374,298	-				+0.8
1,374,324	+				+1.2
1,374,351	-				+0.9
1,374,359	+				+0.7
1,374,378	-				-1.6
1,374,392	+				-2.5
1,374,399	+				+1.7
1,374,401	-				+0.5
1,374,401	-				-1.5
1,374,423	+				-0.4
1,374,463	+				-2.3
1,374,471	-				-0.2
1,374,488	+				-0.9
1,374,495	-				-0.8
1,374,503	-		CCNA_01247	0.10	-1.1
1,374,574	-		CCNA_01247	0.15	-1.8
1,374,574	-		CCNA_01247	0.15	-1.1
1,374,579	-		CCNA_01247	0.16	+0.5
1,374,579	-		CCNA_01247	0.16	-1.4
1,374,645	+		CCNA_01247	0.20	-1.2
1,374,655	-		CCNA_01247	0.21	-1.1
1,374,657	-				+1.3
1,374,691	+		CCNA_01247	0.23	-1.7
1,374,693	+		CCNA_01247	0.23	+0.2
1,374,697	+		CCNA_01247	0.24	+0.4
1,374,697	+		CCNA_01247	0.24	+0.3
1,374,698	+		CCNA_01247	0.24	-0.2
1,374,698	+		CCNA_01247	0.24	+0.5
1,374,700	-		CCNA_01247	0.24	+3.3
1,374,701	-		CCNA_01247	0.24	-0.5
1,374,705	-		CCNA_01247	0.24	-1.3
1,374,716	+		CCNA_01247	0.25	+0.7
1,374,721	+		CCNA_01247	0.25	-2.1
1,374,730	+		CCNA_01247	0.26	-0.3
1,374,730	+				+1.7
1,374,738	-		CCNA_01247	0.27	-2.1
1,374,738	-		CCNA_01247	0.27	-1.0
1,374,764	+		CCNA_01247	0.28	+0.3
1,374,772	+		CCNA_01247	0.29	-0.5
1,374,779	-		CCNA_01247	0.29	-0.0
1,374,822	-		CCNA_01247	0.32	-0.8
1,374,845	+		CCNA_01247	0.34	+0.2
1,374,899	-		CCNA_01247	0.38	-1.9
1,374,948	+		CCNA_01247	0.41	-1.6
1,374,998	+		CCNA_01247	0.45	-0.7
1,375,006	-		CCNA_01247	0.45	+1.2
1,375,040	-		CCNA_01247	0.48	-0.6
1,375,081	+		CCNA_01247	0.50	+1.0
1,375,109	+		CCNA_01247	0.52	-0.4
1,375,133	+		CCNA_01247	0.54	-0.5
1,375,159	+		CCNA_01247	0.56	-2.3
1,375,159	+		CCNA_01247	0.56	-0.5
1,375,175	+		CCNA_01247	0.57	-1.0
1,375,193	-		CCNA_01247	0.58	-1.1
1,375,215	+		CCNA_01247	0.60	+0.9
1,375,222	+		CCNA_01247	0.60	-0.9
1,375,242	+		CCNA_01247	0.62	-1.4
1,375,262	+		CCNA_01247	0.63	+0.0
1,375,290	-		CCNA_01247	0.65	+0.2