Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00714

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00711 and CCNA_00712 are separated by 4 nucleotidesCCNA_00712 and CCNA_03926 are separated by 39 nucleotidesCCNA_03926 and CCNA_00714 are separated by 16 nucleotidesCCNA_00714 and CCNA_03927 are separated by 88 nucleotidesCCNA_03927 and CCNA_03928 are separated by 41 nucleotidesCCNA_03928 and CCNA_00716 are separated by 63 nucleotides CCNA_00711: CCNA_00711 - hypothetical protein, at 768,833 to 769,933 _00711 CCNA_00712: CCNA_00712 - hypothetical protein, at 769,938 to 770,252 _00712 CCNA_03926: CCNA_03926 - hypothetical protein, at 770,292 to 770,423 _03926 CCNA_00714: CCNA_00714 - hypothetical protein, at 770,440 to 770,709 _00714 CCNA_03927: CCNA_03927 - hypothetical protein, at 770,798 to 771,094 _03927 CCNA_03928: CCNA_03928 - hypothetical protein, at 771,136 to 771,327 _03928 CCNA_00716: CCNA_00716 - hypothetical protein, at 771,391 to 771,567 _00716 Position (kb) 770 771Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 769.451 kb on + strand, within CCNA_00711at 769.451 kb on + strand, within CCNA_00711at 769.456 kb on + strand, within CCNA_00711at 769.459 kb on - strand, within CCNA_00711at 769.461 kb on + strand, within CCNA_00711at 769.461 kb on + strand, within CCNA_00711at 769.464 kb on - strand, within CCNA_00711at 769.468 kb on + strand, within CCNA_00711at 769.468 kb on + strand, within CCNA_00711at 769.468 kb on + strand, within CCNA_00711at 769.469 kb on - strand, within CCNA_00711at 769.469 kb on - strand, within CCNA_00711at 769.469 kb on - strand, within CCNA_00711at 769.469 kb on - strand, within CCNA_00711at 769.498 kb on + strand, within CCNA_00711at 769.500 kb on + strand, within CCNA_00711at 769.500 kb on + strand, within CCNA_00711at 769.508 kb on - strand, within CCNA_00711at 769.589 kb on - strand, within CCNA_00711at 769.591 kb on + strand, within CCNA_00711at 769.591 kb on + strand, within CCNA_00711at 769.591 kb on + strand, within CCNA_00711at 769.591 kb on + strand, within CCNA_00711at 769.591 kb on + strand, within CCNA_00711at 769.599 kb on - strand, within CCNA_00711at 769.599 kb on - strand, within CCNA_00711at 769.599 kb on - strand, within CCNA_00711at 769.631 kb on - strand, within CCNA_00711at 769.652 kb on + strand, within CCNA_00711at 769.660 kb on - strand, within CCNA_00711at 769.674 kb on + strand, within CCNA_00711at 769.685 kb on - strand, within CCNA_00711at 769.696 kb on + strand, within CCNA_00711at 769.696 kb on + strand, within CCNA_00711at 769.703 kb on + strand, within CCNA_00711at 769.786 kb on - strand, within CCNA_00711at 769.786 kb on - strand, within CCNA_00711at 769.944 kb on - strandat 770.008 kb on - strand, within CCNA_00712at 770.029 kb on + strand, within CCNA_00712at 770.041 kb on + strand, within CCNA_00712at 770.049 kb on - strand, within CCNA_00712at 770.049 kb on - strand, within CCNA_00712at 770.049 kb on - strand, within CCNA_00712at 770.076 kb on - strand, within CCNA_00712at 770.103 kb on + strand, within CCNA_00712at 770.103 kb on + strand, within CCNA_00712at 770.110 kb on + strand, within CCNA_00712at 770.122 kb on + strand, within CCNA_00712at 770.130 kb on - strand, within CCNA_00712at 770.149 kb on + strand, within CCNA_00712at 770.162 kb on - strand, within CCNA_00712at 770.179 kb on + strand, within CCNA_00712at 770.193 kb on - strand, within CCNA_00712at 770.208 kb on - strand, within CCNA_00712at 770.214 kb on - strand, within CCNA_00712at 770.219 kb on - strand, within CCNA_00712at 770.219 kb on - strand, within CCNA_00712at 770.219 kb on - strand, within CCNA_00712at 770.219 kb on - strand, within CCNA_00712at 770.219 kb on - strand, within CCNA_00712at 770.219 kb on - strand, within CCNA_00712at 770.219 kb on - strand, within CCNA_00712at 770.220 kb on + strand, within CCNA_00712at 770.251 kb on - strandat 770.255 kb on + strandat 770.258 kb on + strandat 770.259 kb on + strandat 770.267 kb on - strandat 770.267 kb on - strandat 770.270 kb on + strandat 770.270 kb on + strandat 770.278 kb on - strandat 770.297 kb on - strandat 770.330 kb on - strand, within CCNA_03926at 770.333 kb on + strand, within CCNA_03926at 770.338 kb on + strand, within CCNA_03926at 770.341 kb on - strand, within CCNA_03926at 770.341 kb on - strand, within CCNA_03926at 770.360 kb on - strand, within CCNA_03926at 770.388 kb on + strand, within CCNA_03926at 770.389 kb on - strand, within CCNA_03926at 770.393 kb on + strand, within CCNA_03926at 770.401 kb on - strand, within CCNA_03926at 770.401 kb on - strand, within CCNA_03926at 770.401 kb on - strand, within CCNA_03926at 770.403 kb on + strand, within CCNA_03926at 770.418 kb on - strandat 770.428 kb on - strandat 770.428 kb on - strandat 770.438 kb on - strandat 770.458 kb on - strandat 770.465 kb on - strandat 770.484 kb on - strand, within CCNA_00714at 770.484 kb on - strand, within CCNA_00714at 770.499 kb on - strand, within CCNA_00714at 770.501 kb on + strand, within CCNA_00714at 770.507 kb on + strand, within CCNA_00714at 770.515 kb on - strand, within CCNA_00714at 770.526 kb on + strand, within CCNA_00714at 770.531 kb on + strand, within CCNA_00714at 770.531 kb on + strand, within CCNA_00714at 770.548 kb on + strand, within CCNA_00714at 770.569 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.574 kb on + strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.582 kb on - strand, within CCNA_00714at 770.588 kb on - strand, within CCNA_00714at 770.603 kb on + strand, within CCNA_00714at 770.608 kb on + strand, within CCNA_00714at 770.619 kb on + strand, within CCNA_00714at 770.624 kb on + strand, within CCNA_00714at 770.627 kb on - strand, within CCNA_00714at 770.627 kb on - strand, within CCNA_00714at 770.627 kb on - strand, within CCNA_00714at 770.627 kb on - strand, within CCNA_00714at 770.629 kb on + strand, within CCNA_00714at 770.632 kb on - strand, within CCNA_00714at 770.638 kb on + strand, within CCNA_00714at 770.638 kb on + strand, within CCNA_00714at 770.654 kb on - strand, within CCNA_00714at 770.682 kb on - strand, within CCNA_00714at 770.698 kb on + strandat 770.709 kb on + strandat 770.768 kb on + strandat 770.789 kb on + strandat 770.794 kb on + strandat 770.833 kb on + strand, within CCNA_03927at 770.833 kb on + strand, within CCNA_03927at 770.993 kb on - strand, within CCNA_03927at 771.000 kb on - strand, within CCNA_03927at 771.024 kb on - strand, within CCNA_03927at 771.031 kb on - strand, within CCNA_03927at 771.033 kb on + strand, within CCNA_03927at 771.041 kb on - strand, within CCNA_03927at 771.109 kb on + strandat 771.109 kb on + strandat 771.114 kb on + strandat 771.133 kb on + strandat 771.133 kb on + strandat 771.135 kb on + strandat 771.135 kb on + strandat 771.143 kb on - strandat 771.176 kb on + strand, within CCNA_03928at 771.181 kb on + strand, within CCNA_03928at 771.184 kb on - strand, within CCNA_03928at 771.189 kb on - strand, within CCNA_03928at 771.194 kb on + strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.239 kb on + strand, within CCNA_03928at 771.259 kb on + strand, within CCNA_03928at 771.260 kb on + strand, within CCNA_03928at 771.260 kb on + strand, within CCNA_03928at 771.273 kb on - strand, within CCNA_03928at 771.277 kb on - strand, within CCNA_03928at 771.277 kb on - strand, within CCNA_03928at 771.277 kb on - strand, within CCNA_03928at 771.306 kb on + strand, within CCNA_03928at 771.316 kb on + strandat 771.336 kb on + strandat 771.344 kb on - strandat 771.344 kb on - strandat 771.373 kb on + strandat 771.378 kb on + strandat 771.378 kb on + strandat 771.381 kb on - strandat 771.381 kb on - strandat 771.386 kb on - strandat 771.396 kb on - strandat 771.397 kb on - strandat 771.406 kb on - strandat 771.406 kb on - strandat 771.427 kb on + strand, within CCNA_00716at 771.428 kb on + strand, within CCNA_00716at 771.431 kb on - strand, within CCNA_00716at 771.448 kb on - strand, within CCNA_00716at 771.449 kb on + strand, within CCNA_00716at 771.449 kb on + strand, within CCNA_00716at 771.457 kb on - strand, within CCNA_00716at 771.457 kb on - strand, within CCNA_00716at 771.475 kb on + strand, within CCNA_00716at 771.475 kb on + strand, within CCNA_00716at 771.540 kb on - strand, within CCNA_00716at 771.560 kb on - strandat 771.564 kb on + strandat 771.653 kb on + strandat 771.653 kb on + strandat 771.653 kb on + strandat 771.653 kb on + strandat 771.661 kb on - strandat 771.682 kb on + strandat 771.683 kb on + strandat 771.696 kb on - strandat 771.696 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloramphenicol 0.0005 mg/ml
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769,451 + CCNA_00711 0.56 -1.9
769,451 + CCNA_00711 0.56 +0.8
769,456 + CCNA_00711 0.57 +1.6
769,459 - CCNA_00711 0.57 +0.5
769,461 + CCNA_00711 0.57 -1.6
769,461 + CCNA_00711 0.57 +1.1
769,464 - CCNA_00711 0.57 -0.9
769,468 + CCNA_00711 0.58 +0.6
769,468 + CCNA_00711 0.58 -1.0
769,468 + CCNA_00711 0.58 +0.0
769,469 - CCNA_00711 0.58 +1.5
769,469 - CCNA_00711 0.58 -1.0
769,469 - CCNA_00711 0.58 +0.1
769,469 - CCNA_00711 0.58 +0.0
769,498 + CCNA_00711 0.60 +0.1
769,500 + CCNA_00711 0.61 +0.2
769,500 + CCNA_00711 0.61 -1.4
769,508 - CCNA_00711 0.61 -0.1
769,589 - CCNA_00711 0.69 +0.6
769,591 + CCNA_00711 0.69 -0.1
769,591 + CCNA_00711 0.69 +0.5
769,591 + CCNA_00711 0.69 -0.2
769,591 + CCNA_00711 0.69 +0.9
769,591 + CCNA_00711 0.69 +0.7
769,599 - CCNA_00711 0.70 -1.5
769,599 - CCNA_00711 0.70 +0.4
769,599 - CCNA_00711 0.70 +0.1
769,631 - CCNA_00711 0.72 -0.4
769,652 + CCNA_00711 0.74 -0.2
769,660 - CCNA_00711 0.75 +1.6
769,674 + CCNA_00711 0.76 -0.4
769,685 - CCNA_00711 0.77 +0.1
769,696 + CCNA_00711 0.78 +0.6
769,696 + CCNA_00711 0.78 -0.5
769,703 + CCNA_00711 0.79 -0.4
769,786 - CCNA_00711 0.87 +0.8
769,786 - CCNA_00711 0.87 -0.7
769,944 - +0.8
770,008 - CCNA_00712 0.22 -0.4
770,029 + CCNA_00712 0.29 +0.0
770,041 + CCNA_00712 0.33 -1.3
770,049 - CCNA_00712 0.35 -0.0
770,049 - CCNA_00712 0.35 +0.1
770,049 - CCNA_00712 0.35 +0.0
770,076 - CCNA_00712 0.44 -1.0
770,103 + CCNA_00712 0.52 -1.9
770,103 + CCNA_00712 0.52 +0.2
770,110 + CCNA_00712 0.55 +0.8
770,122 + CCNA_00712 0.58 -0.9
770,130 - CCNA_00712 0.61 +0.1
770,149 + CCNA_00712 0.67 -0.3
770,162 - CCNA_00712 0.71 -1.0
770,179 + CCNA_00712 0.77 -1.3
770,193 - CCNA_00712 0.81 +1.0
770,208 - CCNA_00712 0.86 -0.3
770,214 - CCNA_00712 0.88 -0.0
770,219 - CCNA_00712 0.89 +0.3
770,219 - CCNA_00712 0.89 -0.3
770,219 - CCNA_00712 0.89 +1.4
770,219 - CCNA_00712 0.89 -0.5
770,219 - CCNA_00712 0.89 -1.1
770,219 - CCNA_00712 0.89 -0.8
770,219 - CCNA_00712 0.89 +0.1
770,220 + CCNA_00712 0.90 +0.1
770,251 - +1.0
770,255 + -0.7
770,258 + -1.1
770,259 + -2.1
770,267 - +0.3
770,267 - +0.2
770,270 + +0.3
770,270 + +1.1
770,278 - +1.2
770,297 - -1.2
770,330 - CCNA_03926 0.29 +0.8
770,333 + CCNA_03926 0.31 -1.9
770,338 + CCNA_03926 0.35 -2.8
770,341 - CCNA_03926 0.37 -0.8
770,341 - CCNA_03926 0.37 +0.3
770,360 - CCNA_03926 0.52 -0.5
770,388 + CCNA_03926 0.73 -1.2
770,389 - CCNA_03926 0.73 -0.3
770,393 + CCNA_03926 0.77 -0.8
770,401 - CCNA_03926 0.83 -1.3
770,401 - CCNA_03926 0.83 +0.5
770,401 - CCNA_03926 0.83 +0.5
770,403 + CCNA_03926 0.84 -1.2
770,418 - +1.6
770,428 - +1.0
770,428 - -0.0
770,438 - -0.5
770,458 - -0.1
770,465 - +0.5
770,484 - CCNA_00714 0.16 -2.3
770,484 - CCNA_00714 0.16 +0.0
770,499 - CCNA_00714 0.22 +0.9
770,501 + CCNA_00714 0.23 +1.7
770,507 + CCNA_00714 0.25 +0.1
770,515 - CCNA_00714 0.28 -0.3
770,526 + CCNA_00714 0.32 +2.3
770,531 + CCNA_00714 0.34 +0.6
770,531 + CCNA_00714 0.34 -1.4
770,548 + CCNA_00714 0.40 -0.4
770,569 + CCNA_00714 0.48 -0.3
770,574 + CCNA_00714 0.50 -0.1
770,574 + CCNA_00714 0.50 -2.1
770,574 + CCNA_00714 0.50 +0.1
770,574 + CCNA_00714 0.50 +0.3
770,574 + CCNA_00714 0.50 -1.2
770,574 + CCNA_00714 0.50 +0.9
770,574 + CCNA_00714 0.50 -0.5
770,574 + CCNA_00714 0.50 +0.8
770,574 + CCNA_00714 0.50 -0.6
770,582 - CCNA_00714 0.53 +0.1
770,582 - CCNA_00714 0.53 -1.7
770,582 - CCNA_00714 0.53 +1.8
770,582 - CCNA_00714 0.53 -0.2
770,582 - CCNA_00714 0.53 -0.3
770,582 - CCNA_00714 0.53 -0.2
770,582 - CCNA_00714 0.53 -2.0
770,582 - CCNA_00714 0.53 +1.3
770,582 - CCNA_00714 0.53 -0.5
770,582 - CCNA_00714 0.53 +0.9
770,582 - CCNA_00714 0.53 +1.3
770,582 - CCNA_00714 0.53 +0.3
770,582 - CCNA_00714 0.53 +0.6
770,582 - CCNA_00714 0.53 -0.9
770,582 - CCNA_00714 0.53 -0.1
770,582 - CCNA_00714 0.53 -0.9
770,588 - CCNA_00714 0.55 -0.5
770,603 + CCNA_00714 0.60 -0.0
770,608 + CCNA_00714 0.62 +0.8
770,619 + CCNA_00714 0.66 -0.4
770,624 + CCNA_00714 0.68 -1.0
770,627 - CCNA_00714 0.69 -2.1
770,627 - CCNA_00714 0.69 -0.5
770,627 - CCNA_00714 0.69 -0.5
770,627 - CCNA_00714 0.69 -1.3
770,629 + CCNA_00714 0.70 -2.6
770,632 - CCNA_00714 0.71 -2.4
770,638 + CCNA_00714 0.73 +0.6
770,638 + CCNA_00714 0.73 -0.4
770,654 - CCNA_00714 0.79 -0.1
770,682 - CCNA_00714 0.90 +0.0
770,698 + +0.5
770,709 + +0.1
770,768 + -2.6
770,789 + +2.3
770,794 + +1.3
770,833 + CCNA_03927 0.12 +0.0
770,833 + CCNA_03927 0.12 -1.4
770,993 - CCNA_03927 0.66 +1.1
771,000 - CCNA_03927 0.68 +2.3
771,024 - CCNA_03927 0.76 -0.2
771,031 - CCNA_03927 0.78 -1.4
771,033 + CCNA_03927 0.79 -0.6
771,041 - CCNA_03927 0.82 +0.1
771,109 + -0.8
771,109 + +0.8
771,114 + +0.6
771,133 + +0.8
771,133 + +1.2
771,135 + -1.6
771,135 + -0.4
771,143 - -0.7
771,176 + CCNA_03928 0.21 +1.1
771,181 + CCNA_03928 0.23 -0.8
771,184 - CCNA_03928 0.25 -1.3
771,189 - CCNA_03928 0.28 -0.5
771,194 + CCNA_03928 0.30 -1.0
771,213 - CCNA_03928 0.40 -0.2
771,213 - CCNA_03928 0.40 +0.4
771,213 - CCNA_03928 0.40 +1.4
771,232 - CCNA_03928 0.50 +1.8
771,232 - CCNA_03928 0.50 -0.4
771,232 - CCNA_03928 0.50 -0.2
771,232 - CCNA_03928 0.50 +0.6
771,239 + CCNA_03928 0.54 +0.0
771,259 + CCNA_03928 0.64 +0.5
771,260 + CCNA_03928 0.65 -0.6
771,260 + CCNA_03928 0.65 +1.0
771,273 - CCNA_03928 0.71 +0.0
771,277 - CCNA_03928 0.73 +0.4
771,277 - CCNA_03928 0.73 -0.6
771,277 - CCNA_03928 0.73 -0.2
771,306 + CCNA_03928 0.89 +0.4
771,316 + -0.1
771,336 + -1.3
771,344 - -1.9
771,344 - -2.1
771,373 + -0.7
771,378 + +0.0
771,378 + -0.7
771,381 - +0.8
771,381 - -0.3
771,386 - +1.8
771,396 - -0.6
771,397 - +1.3
771,406 - -0.3
771,406 - +0.7
771,427 + CCNA_00716 0.20 +0.3
771,428 + CCNA_00716 0.21 -0.9
771,431 - CCNA_00716 0.23 -0.0
771,448 - CCNA_00716 0.32 +0.2
771,449 + CCNA_00716 0.33 +0.6
771,449 + CCNA_00716 0.33 +1.2
771,457 - CCNA_00716 0.37 -0.1
771,457 - CCNA_00716 0.37 +0.0
771,475 + CCNA_00716 0.47 -1.7
771,475 + CCNA_00716 0.47 -1.3
771,540 - CCNA_00716 0.84 +0.2
771,560 - +0.3
771,564 + -1.5
771,653 + -1.8
771,653 + -0.0
771,653 + -0.4
771,653 + -1.1
771,661 - +2.1
771,682 + -1.4
771,683 + +0.9
771,696 - -0.5
771,696 - -0.8

Or see this region's nucleotide sequence