Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00375

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00373 and CCNA_00374 are separated by 5 nucleotidesCCNA_00374 and CCNA_00375 are separated by 421 nucleotidesCCNA_00375 and CCNA_00376 are separated by 70 nucleotidesCCNA_00376 and CCNA_00377 are separated by 114 nucleotides CCNA_00373: CCNA_00373 - ATP synthase A chain, at 389,030 to 389,791 _00373 CCNA_00374: CCNA_00374 - putative ATP synthase protein I, at 389,797 to 390,177 _00374 CCNA_00375: CCNA_00375 - hypothetical protein, at 390,599 to 390,988 _00375 CCNA_00376: CCNA_00376 - putative membrane spanning protein, at 391,059 to 391,838 _00376 CCNA_00377: CCNA_00377 - chromosome partition protein Smc, at 391,953 to 395,396 _00377 Position (kb) 390 391Strain fitness (log2 ratio) -2 -1 0 1 2at 389.839 kb on - strand, within CCNA_00374at 390.175 kb on - strandat 390.175 kb on - strandat 390.175 kb on - strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.352 kb on - strandat 390.377 kb on - strandat 390.391 kb on + strandat 390.399 kb on + strandat 390.424 kb on - strandat 390.426 kb on + strandat 390.490 kb on + strandat 390.507 kb on + strandat 390.577 kb on + strandat 390.577 kb on + strandat 390.661 kb on - strand, within CCNA_00375at 390.676 kb on + strandat 390.676 kb on + strand, within CCNA_00375at 390.676 kb on + strand, within CCNA_00375at 390.684 kb on - strand, within CCNA_00375at 390.703 kb on - strand, within CCNA_00375at 390.774 kb on - strand, within CCNA_00375at 390.869 kb on + strand, within CCNA_00375at 390.877 kb on + strand, within CCNA_00375at 390.924 kb on + strand, within CCNA_00375at 390.937 kb on + strand, within CCNA_00375at 390.947 kb on - strand, within CCNA_00375at 391.000 kb on - strandat 391.064 kb on - strandat 391.068 kb on + strandat 391.074 kb on - strandat 391.125 kb on + strandat 391.171 kb on - strand, within CCNA_00376at 391.186 kb on + strand, within CCNA_00376at 391.188 kb on - strand, within CCNA_00376at 391.220 kb on + strand, within CCNA_00376at 391.232 kb on + strand, within CCNA_00376at 391.240 kb on - strand, within CCNA_00376at 391.281 kb on + strand, within CCNA_00376at 391.294 kb on - strand, within CCNA_00376at 391.366 kb on + strand, within CCNA_00376at 391.385 kb on + strand, within CCNA_00376at 391.435 kb on + strand, within CCNA_00376at 391.441 kb on - strand, within CCNA_00376at 391.457 kb on + strand, within CCNA_00376at 391.482 kb on + strand, within CCNA_00376at 391.516 kb on - strand, within CCNA_00376at 391.539 kb on + strand, within CCNA_00376at 391.559 kb on + strand, within CCNA_00376at 391.606 kb on - strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.626 kb on + strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.634 kb on + strand, within CCNA_00376at 391.663 kb on - strand, within CCNA_00376at 391.673 kb on + strand, within CCNA_00376at 391.673 kb on + strand, within CCNA_00376at 391.681 kb on - strand, within CCNA_00376at 391.681 kb on - strand, within CCNA_00376at 391.716 kb on + strand, within CCNA_00376at 391.722 kb on + strand, within CCNA_00376at 391.730 kb on + strand, within CCNA_00376at 391.735 kb on + strand, within CCNA_00376at 391.738 kb on - strand, within CCNA_00376at 391.738 kb on - strand, within CCNA_00376at 391.768 kb on - strandat 391.832 kb on - strandat 391.878 kb on + strandat 391.896 kb on - strandat 391.907 kb on - strandat 391.935 kb on + strandat 391.980 kb on + strandat 391.980 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloramphenicol 0.0005 mg/ml
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389,839 - CCNA_00374 0.11 +0.8
390,175 - +0.2
390,175 - +0.8
390,175 - +1.3
390,274 + -0.9
390,274 + +2.0
390,274 + -0.5
390,274 + +1.2
390,274 + +0.8
390,274 + -0.8
390,274 + +1.5
390,282 - -0.9
390,282 - -1.1
390,282 - +0.7
390,282 - -0.3
390,282 - +0.1
390,282 - +0.1
390,282 - -0.6
390,282 - -0.2
390,282 - -0.2
390,282 - +0.1
390,352 - -1.7
390,377 - +0.7
390,391 + -1.9
390,399 + -0.4
390,424 - -1.1
390,426 + -0.4
390,490 + -0.2
390,507 + +0.0
390,577 + +0.7
390,577 + +0.9
390,661 - CCNA_00375 0.16 +1.2
390,676 + +1.5
390,676 + CCNA_00375 0.20 +0.5
390,676 + CCNA_00375 0.20 +1.2
390,684 - CCNA_00375 0.22 +1.2
390,703 - CCNA_00375 0.27 -0.9
390,774 - CCNA_00375 0.45 -1.5
390,869 + CCNA_00375 0.69 +1.1
390,877 + CCNA_00375 0.71 +0.7
390,924 + CCNA_00375 0.83 +1.2
390,937 + CCNA_00375 0.87 +0.3
390,947 - CCNA_00375 0.89 +2.5
391,000 - -1.4
391,064 - -0.2
391,068 + +0.5
391,074 - +0.8
391,125 + -1.0
391,171 - CCNA_00376 0.14 -0.9
391,186 + CCNA_00376 0.16 +0.8
391,188 - CCNA_00376 0.17 -1.3
391,220 + CCNA_00376 0.21 +0.1
391,232 + CCNA_00376 0.22 +0.2
391,240 - CCNA_00376 0.23 -1.7
391,281 + CCNA_00376 0.28 +1.5
391,294 - CCNA_00376 0.30 +2.5
391,366 + CCNA_00376 0.39 -0.5
391,385 + CCNA_00376 0.42 -1.9
391,435 + CCNA_00376 0.48 -0.6
391,441 - CCNA_00376 0.49 +0.5
391,457 + CCNA_00376 0.51 -1.2
391,482 + CCNA_00376 0.54 +0.6
391,516 - CCNA_00376 0.59 +0.7
391,539 + CCNA_00376 0.62 -2.5
391,559 + CCNA_00376 0.64 +0.8
391,606 - CCNA_00376 0.70 -1.3
391,624 + CCNA_00376 0.72 +0.9
391,624 + CCNA_00376 0.72 -0.1
391,624 + CCNA_00376 0.72 -0.6
391,624 + CCNA_00376 0.72 +0.3
391,624 + CCNA_00376 0.72 -0.9
391,624 + CCNA_00376 0.72 -0.4
391,624 + CCNA_00376 0.72 +0.0
391,624 + CCNA_00376 0.72 -1.3
391,626 + CCNA_00376 0.73 +0.8
391,632 - CCNA_00376 0.73 -1.8
391,632 - CCNA_00376 0.73 +1.5
391,632 - CCNA_00376 0.73 -1.3
391,632 - CCNA_00376 0.73 +0.5
391,632 - CCNA_00376 0.73 +1.0
391,632 - CCNA_00376 0.73 +2.0
391,632 - CCNA_00376 0.73 -2.4
391,632 - CCNA_00376 0.73 -1.8
391,634 + CCNA_00376 0.74 -0.4
391,663 - CCNA_00376 0.77 -0.7
391,673 + CCNA_00376 0.79 -0.6
391,673 + CCNA_00376 0.79 +0.1
391,681 - CCNA_00376 0.80 -0.3
391,681 - CCNA_00376 0.80 -1.3
391,716 + CCNA_00376 0.84 -1.6
391,722 + CCNA_00376 0.85 -1.2
391,730 + CCNA_00376 0.86 +0.5
391,735 + CCNA_00376 0.87 +1.5
391,738 - CCNA_00376 0.87 +1.0
391,738 - CCNA_00376 0.87 -0.2
391,768 - -0.3
391,832 - -0.7
391,878 + +1.0
391,896 - +1.0
391,907 - -0.5
391,935 + +0.5
391,980 + +2.5
391,980 + -2.3

Or see this region's nucleotide sequence