Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00116

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00115 and CCNA_00116 are separated by 138 nucleotidesCCNA_00116 and CCNA_00117 are separated by 161 nucleotides CCNA_00115: CCNA_00115 - TolB protein, at 122,939 to 126,268 _00115 CCNA_00116: CCNA_00116 - phosphoglucosamine mutase, at 126,407 to 127,753 _00116 CCNA_00117: CCNA_00117 - glucosamine-fructose-6-phosphate aminotransferase, isomerizing, at 127,915 to 129,735 _00117 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2at 125.407 kb on + strand, within CCNA_00115at 125.475 kb on + strand, within CCNA_00115at 125.535 kb on - strand, within CCNA_00115at 125.541 kb on - strand, within CCNA_00115at 125.556 kb on + strand, within CCNA_00115at 125.556 kb on + strand, within CCNA_00115at 125.557 kb on - strand, within CCNA_00115at 125.594 kb on + strand, within CCNA_00115at 125.594 kb on + strand, within CCNA_00115at 125.594 kb on + strand, within CCNA_00115at 125.600 kb on - strand, within CCNA_00115at 125.634 kb on + strand, within CCNA_00115at 125.653 kb on + strand, within CCNA_00115at 125.653 kb on + strand, within CCNA_00115at 125.653 kb on + strand, within CCNA_00115at 125.660 kb on + strand, within CCNA_00115at 125.661 kb on - strand, within CCNA_00115at 125.661 kb on - strand, within CCNA_00115at 125.661 kb on - strand, within CCNA_00115at 125.672 kb on - strand, within CCNA_00115at 125.678 kb on - strand, within CCNA_00115at 125.678 kb on - strand, within CCNA_00115at 125.688 kb on - strand, within CCNA_00115at 125.720 kb on + strand, within CCNA_00115at 125.721 kb on - strand, within CCNA_00115at 125.732 kb on + strand, within CCNA_00115at 125.742 kb on - strand, within CCNA_00115at 125.752 kb on - strandat 125.754 kb on + strand, within CCNA_00115at 125.755 kb on + strand, within CCNA_00115at 125.763 kb on - strand, within CCNA_00115at 125.798 kb on + strand, within CCNA_00115at 125.824 kb on - strand, within CCNA_00115at 125.858 kb on + strand, within CCNA_00115at 125.884 kb on - strand, within CCNA_00115at 125.912 kb on + strand, within CCNA_00115at 125.918 kb on + strand, within CCNA_00115at 125.920 kb on - strand, within CCNA_00115at 125.926 kb on - strand, within CCNA_00115at 125.943 kb on - strandat 125.963 kb on - strandat 125.980 kb on - strandat 125.989 kb on + strandat 125.989 kb on + strandat 125.989 kb on + strandat 125.997 kb on - strandat 126.010 kb on + strandat 126.010 kb on + strandat 126.018 kb on - strandat 126.018 kb on - strandat 126.023 kb on - strandat 126.059 kb on + strandat 126.107 kb on + strandat 126.136 kb on + strandat 126.139 kb on + strandat 126.147 kb on + strandat 126.161 kb on - strandat 126.199 kb on - strandat 126.217 kb on + strandat 126.217 kb on + strandat 126.217 kb on + strandat 126.218 kb on + strandat 126.225 kb on - strandat 126.225 kb on - strandat 126.265 kb on - strandat 126.267 kb on + strandat 126.275 kb on - strandat 126.275 kb on - strandat 126.305 kb on + strandat 126.319 kb on - strandat 126.343 kb on + strandat 126.345 kb on - strandat 126.359 kb on - strandat 126.370 kb on - strandat 126.398 kb on - strandat 126.403 kb on - strandat 126.421 kb on + strandat 127.770 kb on + strandat 127.778 kb on - strandat 127.778 kb on - strandat 127.837 kb on + strandat 127.846 kb on - strandat 127.883 kb on - strandat 127.883 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloramphenicol 0.0005 mg/ml
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125,407 + CCNA_00115 0.74 -0.8
125,475 + CCNA_00115 0.76 -0.7
125,535 - CCNA_00115 0.78 -1.1
125,541 - CCNA_00115 0.78 -1.5
125,556 + CCNA_00115 0.79 -0.1
125,556 + CCNA_00115 0.79 -0.6
125,557 - CCNA_00115 0.79 +2.6
125,594 + CCNA_00115 0.80 +0.3
125,594 + CCNA_00115 0.80 -0.1
125,594 + CCNA_00115 0.80 -1.3
125,600 - CCNA_00115 0.80 +0.6
125,634 + CCNA_00115 0.81 -1.3
125,653 + CCNA_00115 0.82 -0.4
125,653 + CCNA_00115 0.82 -0.2
125,653 + CCNA_00115 0.82 -1.4
125,660 + CCNA_00115 0.82 -0.1
125,661 - CCNA_00115 0.82 -0.3
125,661 - CCNA_00115 0.82 -1.4
125,661 - CCNA_00115 0.82 -2.6
125,672 - CCNA_00115 0.82 -0.9
125,678 - CCNA_00115 0.82 +0.6
125,678 - CCNA_00115 0.82 -0.9
125,688 - CCNA_00115 0.83 -0.4
125,720 + CCNA_00115 0.84 -1.2
125,721 - CCNA_00115 0.84 -0.8
125,732 + CCNA_00115 0.84 -1.2
125,742 - CCNA_00115 0.84 -0.8
125,752 - +0.6
125,754 + CCNA_00115 0.85 +0.6
125,755 + CCNA_00115 0.85 +0.1
125,763 - CCNA_00115 0.85 -0.4
125,798 + CCNA_00115 0.86 +1.6
125,824 - CCNA_00115 0.87 -1.6
125,858 + CCNA_00115 0.88 -1.2
125,884 - CCNA_00115 0.88 -0.2
125,912 + CCNA_00115 0.89 -0.3
125,918 + CCNA_00115 0.89 -0.2
125,920 - CCNA_00115 0.90 -0.5
125,926 - CCNA_00115 0.90 -0.9
125,943 - -0.1
125,963 - +0.3
125,980 - -0.7
125,989 + +2.6
125,989 + -0.8
125,989 + -0.8
125,997 - -0.0
126,010 + -0.4
126,010 + -2.0
126,018 - -1.2
126,018 - -1.1
126,023 - -0.9
126,059 + -0.1
126,107 + -0.3
126,136 + +0.3
126,139 + +1.6
126,147 + -1.1
126,161 - -0.0
126,199 - +0.9
126,217 + -0.8
126,217 + -1.0
126,217 + -0.6
126,218 + +0.2
126,225 - -1.5
126,225 - -1.5
126,265 - +1.8
126,267 + -0.2
126,275 - -0.4
126,275 - +1.0
126,305 + +0.0
126,319 - +1.0
126,343 + +0.5
126,345 - -1.6
126,359 - +0.5
126,370 - +0.6
126,398 - +0.8
126,403 - +0.3
126,421 + -0.3
127,770 + -0.7
127,778 - +0.3
127,778 - -2.2
127,837 + -1.9
127,846 - +0.2
127,883 - +0.2
127,883 - +1.4

Or see this region's nucleotide sequence