Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29705

Experiment: L-Phenylalanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS29700 and BPHYT_RS29705 are separated by 209 nucleotidesBPHYT_RS29705 and BPHYT_RS29710 are separated by 12 nucleotides BPHYT_RS29700: BPHYT_RS29700 - cytochrome C1, at 2,213,904 to 2,215,961 _RS29700 BPHYT_RS29705: BPHYT_RS29705 - (2Fe-2S)-binding protein, at 2,216,171 to 2,216,896 _RS29705 BPHYT_RS29710: BPHYT_RS29710 - FAD-binding molybdopterin dehydrogenase, at 2,216,909 to 2,217,910 _RS29710 Position (kb) 2216 2217Strain fitness (log2 ratio) -1 0 1at 2215.187 kb on + strand, within BPHYT_RS29700at 2215.187 kb on + strand, within BPHYT_RS29700at 2215.268 kb on - strand, within BPHYT_RS29700at 2215.942 kb on - strandat 2216.050 kb on + strandat 2216.050 kb on + strandat 2216.434 kb on - strand, within BPHYT_RS29705at 2216.442 kb on - strand, within BPHYT_RS29705at 2216.660 kb on - strand, within BPHYT_RS29705at 2216.660 kb on - strand, within BPHYT_RS29705at 2217.593 kb on + strand, within BPHYT_RS29710at 2217.621 kb on - strand, within BPHYT_RS29710

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
remove
2,215,187 + BPHYT_RS29700 0.62 -0.1
2,215,187 + BPHYT_RS29700 0.62 -0.1
2,215,268 - BPHYT_RS29700 0.66 +0.2
2,215,942 - +0.4
2,216,050 + -0.3
2,216,050 + -0.0
2,216,434 - BPHYT_RS29705 0.36 -0.8
2,216,442 - BPHYT_RS29705 0.37 -1.4
2,216,660 - BPHYT_RS29705 0.67 -0.4
2,216,660 - BPHYT_RS29705 0.67 +0.0
2,217,593 + BPHYT_RS29710 0.68 +0.1
2,217,621 - BPHYT_RS29710 0.71 -0.2

Or see this region's nucleotide sequence