Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01880 and BPHYT_RS01885 are separated by 423 nucleotides BPHYT_RS01885 and BPHYT_RS01890 are separated by 132 nucleotides
BPHYT_RS01880: BPHYT_RS01880 - nitronate monooxygenase, at 427,454 to 428,554
_RS01880
BPHYT_RS01885: BPHYT_RS01885 - branched-chain amino acid ABC transporter substrate-binding protein, at 428,978 to 430,123
_RS01885
BPHYT_RS01890: BPHYT_RS01890 - cupin, at 430,256 to 431,272
_RS01890
Position (kb) 428
429
430
431 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 428.298 kb on + strand, within BPHYT_RS01880 at 428.417 kb on + strand, within BPHYT_RS01880 at 428.417 kb on + strand, within BPHYT_RS01880 at 428.417 kb on + strand, within BPHYT_RS01880 at 428.417 kb on + strand, within BPHYT_RS01880 at 428.418 kb on - strand, within BPHYT_RS01880 at 428.427 kb on + strand, within BPHYT_RS01880 at 428.621 kb on - strand at 428.636 kb on + strand at 428.749 kb on + strand at 428.749 kb on + strand at 428.752 kb on + strand at 428.752 kb on + strand at 428.752 kb on + strand at 428.752 kb on + strand at 428.803 kb on + strand at 428.804 kb on - strand at 428.804 kb on - strand at 428.819 kb on + strand at 428.944 kb on + strand at 428.945 kb on - strand at 428.975 kb on + strand at 428.975 kb on + strand at 428.975 kb on + strand at 428.975 kb on + strand at 429.335 kb on + strand, within BPHYT_RS01885 at 429.335 kb on + strand, within BPHYT_RS01885 at 429.335 kb on + strand, within BPHYT_RS01885 at 429.335 kb on + strand, within BPHYT_RS01885 at 429.336 kb on - strand at 429.336 kb on - strand, within BPHYT_RS01885 at 429.337 kb on + strand, within BPHYT_RS01885 at 429.461 kb on + strand, within BPHYT_RS01885 at 429.461 kb on + strand, within BPHYT_RS01885 at 429.665 kb on + strand, within BPHYT_RS01885 at 429.666 kb on - strand, within BPHYT_RS01885 at 429.666 kb on - strand, within BPHYT_RS01885 at 429.866 kb on + strand, within BPHYT_RS01885 at 429.866 kb on + strand, within BPHYT_RS01885 at 429.867 kb on - strand, within BPHYT_RS01885 at 429.900 kb on - strand, within BPHYT_RS01885 at 429.900 kb on - strand, within BPHYT_RS01885 at 429.915 kb on - strand, within BPHYT_RS01885 at 429.915 kb on - strand, within BPHYT_RS01885 at 429.926 kb on + strand, within BPHYT_RS01885 at 430.004 kb on + strand, within BPHYT_RS01885 at 430.005 kb on - strand, within BPHYT_RS01885 at 430.074 kb on - strand at 430.079 kb on + strand at 430.079 kb on + strand at 430.080 kb on - strand at 430.080 kb on - strand at 430.080 kb on - strand at 430.080 kb on - strand at 430.121 kb on + strand at 430.173 kb on + strand at 430.482 kb on - strand, within BPHYT_RS01890 at 430.498 kb on + strand at 430.499 kb on - strand, within BPHYT_RS01890 at 430.499 kb on - strand, within BPHYT_RS01890 at 430.566 kb on - strand, within BPHYT_RS01890 at 430.569 kb on - strand, within BPHYT_RS01890 at 430.569 kb on - strand, within BPHYT_RS01890 at 430.644 kb on - strand, within BPHYT_RS01890 at 430.757 kb on + strand, within BPHYT_RS01890 at 430.800 kb on - strand, within BPHYT_RS01890 at 430.800 kb on - strand, within BPHYT_RS01890 at 430.813 kb on + strand, within BPHYT_RS01890 at 430.877 kb on + strand, within BPHYT_RS01890 at 430.877 kb on + strand, within BPHYT_RS01890 at 431.030 kb on - strand, within BPHYT_RS01890
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 428,298 + BPHYT_RS01880 0.77 -1.3 428,417 + BPHYT_RS01880 0.87 -0.1 428,417 + BPHYT_RS01880 0.87 -0.4 428,417 + BPHYT_RS01880 0.87 -0.1 428,417 + BPHYT_RS01880 0.87 -0.6 428,418 - BPHYT_RS01880 0.88 +0.9 428,427 + BPHYT_RS01880 0.88 -0.0 428,621 - +0.2 428,636 + -0.2 428,749 + -0.3 428,749 + +1.0 428,752 + +0.2 428,752 + +0.3 428,752 + +0.9 428,752 + +1.1 428,803 + +0.0 428,804 - -1.4 428,804 - -0.2 428,819 + +0.3 428,944 + -0.5 428,945 - -2.6 428,975 + -1.9 428,975 + -1.4 428,975 + -1.4 428,975 + +0.5 429,335 + BPHYT_RS01885 0.31 -4.8 429,335 + BPHYT_RS01885 0.31 -2.1 429,335 + BPHYT_RS01885 0.31 -1.3 429,335 + BPHYT_RS01885 0.31 -1.6 429,336 - +0.9 429,336 - BPHYT_RS01885 0.31 -0.5 429,337 + BPHYT_RS01885 0.31 -1.1 429,461 + BPHYT_RS01885 0.42 -1.2 429,461 + BPHYT_RS01885 0.42 -1.5 429,665 + BPHYT_RS01885 0.60 -1.1 429,666 - BPHYT_RS01885 0.60 -2.4 429,666 - BPHYT_RS01885 0.60 -0.9 429,866 + BPHYT_RS01885 0.77 -2.0 429,866 + BPHYT_RS01885 0.77 -2.2 429,867 - BPHYT_RS01885 0.78 -2.0 429,900 - BPHYT_RS01885 0.80 -2.5 429,900 - BPHYT_RS01885 0.80 -0.8 429,915 - BPHYT_RS01885 0.82 -2.1 429,915 - BPHYT_RS01885 0.82 -1.6 429,926 + BPHYT_RS01885 0.83 -1.7 430,004 + BPHYT_RS01885 0.90 -1.8 430,005 - BPHYT_RS01885 0.90 -1.7 430,074 - -0.7 430,079 + +0.5 430,079 + -0.8 430,080 - -0.1 430,080 - +0.5 430,080 - +0.3 430,080 - -0.0 430,121 + -0.8 430,173 + +1.0 430,482 - BPHYT_RS01890 0.22 -1.0 430,498 + +3.5 430,499 - BPHYT_RS01890 0.24 +0.1 430,499 - BPHYT_RS01890 0.24 +0.6 430,566 - BPHYT_RS01890 0.30 -0.1 430,569 - BPHYT_RS01890 0.31 +0.2 430,569 - BPHYT_RS01890 0.31 +0.8 430,644 - BPHYT_RS01890 0.38 +0.5 430,757 + BPHYT_RS01890 0.49 -1.5 430,800 - BPHYT_RS01890 0.53 -1.3 430,800 - BPHYT_RS01890 0.53 +0.2 430,813 + BPHYT_RS01890 0.55 +0.4 430,877 + BPHYT_RS01890 0.61 +0.0 430,877 + BPHYT_RS01890 0.61 +0.2 431,030 - BPHYT_RS01890 0.76 +0.0
Or see this region's nucleotide sequence