Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23275 and AO353_23280 are separated by 149 nucleotides AO353_23280 and AO353_23285 are separated by 366 nucleotides AO353_23285 and AO353_23290 are separated by 298 nucleotides
AO353_23275: AO353_23275 - lysine transporter LysE, at 5,105,797 to 5,106,417
_23275
AO353_23280: AO353_23280 - hypothetical protein, at 5,106,567 to 5,106,902
_23280
AO353_23285: AO353_23285 - hypothetical protein, at 5,107,269 to 5,107,628
_23285
AO353_23290: AO353_23290 - cystathionine beta-synthase, at 5,107,927 to 5,109,303
_23290
Position (kb) 5107
5108 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5106.399 kb on + strand at 5106.399 kb on + strand at 5106.399 kb on + strand at 5106.399 kb on + strand at 5106.399 kb on + strand at 5106.399 kb on + strand at 5106.400 kb on - strand at 5106.400 kb on - strand at 5106.400 kb on - strand at 5106.400 kb on - strand at 5106.400 kb on - strand at 5106.400 kb on - strand at 5106.449 kb on - strand at 5106.449 kb on - strand at 5106.470 kb on - strand at 5106.499 kb on + strand at 5106.499 kb on + strand at 5106.500 kb on - strand at 5106.511 kb on + strand at 5106.516 kb on + strand at 5106.516 kb on + strand at 5106.516 kb on + strand at 5106.516 kb on + strand at 5106.516 kb on + strand at 5106.516 kb on + strand at 5106.517 kb on - strand at 5106.517 kb on - strand at 5106.517 kb on - strand at 5106.560 kb on + strand at 5106.560 kb on + strand at 5106.560 kb on + strand at 5106.561 kb on - strand at 5106.598 kb on + strand at 5106.598 kb on + strand at 5106.599 kb on - strand at 5106.599 kb on - strand at 5106.599 kb on - strand at 5106.599 kb on - strand at 5106.599 kb on - strand at 5106.599 kb on - strand at 5106.654 kb on + strand, within AO353_23280 at 5106.654 kb on + strand, within AO353_23280 at 5106.654 kb on + strand, within AO353_23280 at 5106.655 kb on - strand, within AO353_23280 at 5106.655 kb on - strand, within AO353_23280 at 5106.655 kb on - strand, within AO353_23280 at 5106.669 kb on + strand, within AO353_23280 at 5106.669 kb on + strand, within AO353_23280 at 5106.670 kb on - strand, within AO353_23280 at 5106.670 kb on - strand, within AO353_23280 at 5106.670 kb on - strand, within AO353_23280 at 5106.900 kb on + strand at 5106.900 kb on + strand at 5106.901 kb on - strand at 5106.901 kb on - strand at 5106.928 kb on + strand at 5106.977 kb on - strand at 5107.098 kb on + strand at 5107.098 kb on + strand at 5107.123 kb on + strand at 5107.187 kb on + strand at 5107.187 kb on + strand at 5107.188 kb on - strand at 5107.188 kb on - strand at 5107.191 kb on + strand at 5107.191 kb on + strand at 5107.191 kb on + strand at 5107.192 kb on - strand at 5107.192 kb on - strand at 5107.192 kb on - strand at 5107.192 kb on - strand at 5107.291 kb on + strand at 5107.291 kb on + strand at 5107.291 kb on + strand at 5107.466 kb on + strand, within AO353_23285 at 5107.467 kb on - strand, within AO353_23285 at 5107.467 kb on - strand, within AO353_23285 at 5107.467 kb on - strand, within AO353_23285 at 5107.539 kb on - strand, within AO353_23285 at 5107.541 kb on - strand, within AO353_23285 at 5107.601 kb on + strand at 5107.602 kb on - strand at 5107.704 kb on + strand at 5107.704 kb on + strand at 5107.705 kb on - strand at 5107.705 kb on - strand at 5107.747 kb on + strand at 5107.832 kb on + strand at 5107.833 kb on - strand at 5107.833 kb on - strand at 5107.971 kb on + strand at 5108.227 kb on - strand, within AO353_23290 at 5108.309 kb on - strand, within AO353_23290 at 5108.312 kb on - strand, within AO353_23290 at 5108.573 kb on - strand, within AO353_23290
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 5,106,399 + +0.7 5,106,399 + -1.2 5,106,399 + -1.8 5,106,399 + +0.2 5,106,399 + +0.1 5,106,399 + +0.4 5,106,400 - -0.6 5,106,400 - +0.6 5,106,400 - +0.5 5,106,400 - +1.7 5,106,400 - +1.9 5,106,400 - +0.1 5,106,449 - -0.5 5,106,449 - -0.7 5,106,470 - +1.6 5,106,499 + -0.5 5,106,499 + +0.3 5,106,500 - -0.1 5,106,511 + +1.3 5,106,516 + -0.1 5,106,516 + +1.3 5,106,516 + +0.6 5,106,516 + -0.6 5,106,516 + -0.3 5,106,516 + +0.8 5,106,517 - -0.5 5,106,517 - -0.7 5,106,517 - -0.1 5,106,560 + -0.2 5,106,560 + +0.4 5,106,560 + -0.4 5,106,561 - +1.7 5,106,598 + +0.1 5,106,598 + -0.6 5,106,599 - -0.3 5,106,599 - +0.3 5,106,599 - -0.0 5,106,599 - +1.3 5,106,599 - +0.8 5,106,599 - +0.7 5,106,654 + AO353_23280 0.26 -0.8 5,106,654 + AO353_23280 0.26 +1.0 5,106,654 + AO353_23280 0.26 -0.4 5,106,655 - AO353_23280 0.26 -0.7 5,106,655 - AO353_23280 0.26 +0.1 5,106,655 - AO353_23280 0.26 -0.2 5,106,669 + AO353_23280 0.30 -0.1 5,106,669 + AO353_23280 0.30 -0.3 5,106,670 - AO353_23280 0.31 -0.7 5,106,670 - AO353_23280 0.31 +2.0 5,106,670 - AO353_23280 0.31 -0.5 5,106,900 + +0.1 5,106,900 + -1.9 5,106,901 - +0.1 5,106,901 - +1.3 5,106,928 + +0.9 5,106,977 - -0.5 5,107,098 + -0.6 5,107,098 + -0.7 5,107,123 + -0.5 5,107,187 + +0.0 5,107,187 + -0.6 5,107,188 - -0.2 5,107,188 - +0.6 5,107,191 + +1.0 5,107,191 + +0.3 5,107,191 + -1.8 5,107,192 - +0.9 5,107,192 - -0.6 5,107,192 - +1.1 5,107,192 - -2.3 5,107,291 + -0.0 5,107,291 + -1.0 5,107,291 + -0.5 5,107,466 + AO353_23285 0.55 -1.0 5,107,467 - AO353_23285 0.55 -1.0 5,107,467 - AO353_23285 0.55 -2.0 5,107,467 - AO353_23285 0.55 +0.8 5,107,539 - AO353_23285 0.75 -0.7 5,107,541 - AO353_23285 0.76 +0.0 5,107,601 + -1.4 5,107,602 - +0.1 5,107,704 + +0.8 5,107,704 + +0.6 5,107,705 - +1.3 5,107,705 - -0.9 5,107,747 + +0.3 5,107,832 + -0.0 5,107,833 - +1.2 5,107,833 - -1.9 5,107,971 + +0.8 5,108,227 - AO353_23290 0.22 -1.1 5,108,309 - AO353_23290 0.28 +0.1 5,108,312 - AO353_23290 0.28 +2.6 5,108,573 - AO353_23290 0.47 +1.3
Or see this region's nucleotide sequence