Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07740

Experiment: benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07735 and AO353_07740 are separated by 193 nucleotidesAO353_07740 and AO353_07745 are separated by 86 nucleotides AO353_07735: AO353_07735 - AraC family transcriptional regulator, at 1,703,877 to 1,704,827 _07735 AO353_07740: AO353_07740 - ABC transporter for Carnitine, substrate-binding component (from data), at 1,705,021 to 1,705,965 _07740 AO353_07745: AO353_07745 - NADPH:quinone reductase, at 1,706,052 to 1,706,939 _07745 Position (kb) 1705 1706Strain fitness (log2 ratio) -2 -1 0 1 2at 1704.043 kb on - strand, within AO353_07735at 1704.052 kb on + strand, within AO353_07735at 1704.052 kb on + strand, within AO353_07735at 1704.052 kb on + strand, within AO353_07735at 1704.053 kb on - strand, within AO353_07735at 1704.053 kb on - strand, within AO353_07735at 1704.183 kb on + strand, within AO353_07735at 1704.183 kb on + strand, within AO353_07735at 1704.183 kb on + strand, within AO353_07735at 1704.183 kb on + strand, within AO353_07735at 1704.184 kb on - strand, within AO353_07735at 1704.184 kb on - strand, within AO353_07735at 1704.184 kb on - strand, within AO353_07735at 1704.184 kb on - strand, within AO353_07735at 1704.184 kb on - strand, within AO353_07735at 1704.345 kb on - strand, within AO353_07735at 1704.422 kb on - strand, within AO353_07735at 1704.422 kb on - strand, within AO353_07735at 1704.722 kb on - strand, within AO353_07735at 1704.722 kb on - strand, within AO353_07735at 1704.722 kb on - strand, within AO353_07735at 1704.722 kb on - strand, within AO353_07735at 1704.722 kb on - strand, within AO353_07735at 1704.811 kb on + strandat 1704.812 kb on - strandat 1704.866 kb on + strandat 1704.867 kb on - strandat 1704.867 kb on - strandat 1704.956 kb on + strandat 1704.956 kb on + strandat 1704.998 kb on - strandat 1705.196 kb on - strand, within AO353_07740at 1705.390 kb on + strand, within AO353_07740at 1705.390 kb on + strand, within AO353_07740at 1705.390 kb on + strand, within AO353_07740at 1705.390 kb on + strand, within AO353_07740at 1705.391 kb on - strand, within AO353_07740at 1705.462 kb on + strand, within AO353_07740at 1705.463 kb on - strand, within AO353_07740at 1705.463 kb on - strand, within AO353_07740at 1705.463 kb on - strand, within AO353_07740at 1705.666 kb on + strand, within AO353_07740at 1705.666 kb on + strand, within AO353_07740at 1705.666 kb on + strand, within AO353_07740at 1705.666 kb on + strand, within AO353_07740at 1705.666 kb on + strand, within AO353_07740at 1705.667 kb on - strand, within AO353_07740at 1705.667 kb on - strand, within AO353_07740at 1705.741 kb on + strand, within AO353_07740at 1705.741 kb on + strand, within AO353_07740at 1705.741 kb on + strand, within AO353_07740at 1705.741 kb on + strand, within AO353_07740at 1705.741 kb on + strand, within AO353_07740at 1705.963 kb on + strandat 1705.963 kb on + strandat 1705.964 kb on - strandat 1706.244 kb on + strand, within AO353_07745at 1706.245 kb on - strand, within AO353_07745at 1706.475 kb on + strand, within AO353_07745at 1706.475 kb on + strand, within AO353_07745at 1706.475 kb on + strand, within AO353_07745at 1706.475 kb on + strand, within AO353_07745at 1706.475 kb on + strand, within AO353_07745at 1706.475 kb on + strand, within AO353_07745at 1706.476 kb on - strand, within AO353_07745at 1706.476 kb on - strand, within AO353_07745at 1706.476 kb on - strand, within AO353_07745at 1706.476 kb on - strand, within AO353_07745at 1706.476 kb on - strand, within AO353_07745at 1706.476 kb on - strand, within AO353_07745at 1706.476 kb on - strand, within AO353_07745at 1706.476 kb on - strand, within AO353_07745at 1706.476 kb on - strand, within AO353_07745at 1706.476 kb on - strand, within AO353_07745at 1706.476 kb on - strand, within AO353_07745at 1706.953 kb on + strandat 1706.953 kb on + strandat 1706.953 kb on + strandat 1706.953 kb on + strandat 1706.953 kb on + strandat 1706.953 kb on + strandat 1706.953 kb on + strandat 1706.954 kb on - strandat 1706.954 kb on - strandat 1706.954 kb on - strandat 1706.954 kb on - strandat 1706.954 kb on - strandat 1706.954 kb on - strandat 1706.954 kb on - strandat 1706.954 kb on - strandat 1706.954 kb on - strandat 1706.954 kb on - strandat 1706.962 kb on + strandat 1706.962 kb on + strandat 1706.962 kb on + strandat 1706.962 kb on + strandat 1706.963 kb on - strandat 1706.963 kb on - strandat 1706.963 kb on - strandat 1706.963 kb on - strandat 1706.963 kb on - strandat 1706.963 kb on - strandat 1706.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml
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1,704,043 - AO353_07735 0.17 -0.9
1,704,052 + AO353_07735 0.18 +1.6
1,704,052 + AO353_07735 0.18 -0.2
1,704,052 + AO353_07735 0.18 +0.8
1,704,053 - AO353_07735 0.19 +0.0
1,704,053 - AO353_07735 0.19 -0.0
1,704,183 + AO353_07735 0.32 -1.3
1,704,183 + AO353_07735 0.32 +0.6
1,704,183 + AO353_07735 0.32 -0.8
1,704,183 + AO353_07735 0.32 -0.7
1,704,184 - AO353_07735 0.32 -0.8
1,704,184 - AO353_07735 0.32 +0.6
1,704,184 - AO353_07735 0.32 -1.0
1,704,184 - AO353_07735 0.32 -0.5
1,704,184 - AO353_07735 0.32 +1.1
1,704,345 - AO353_07735 0.49 +0.4
1,704,422 - AO353_07735 0.57 -1.3
1,704,422 - AO353_07735 0.57 -0.4
1,704,722 - AO353_07735 0.89 -0.8
1,704,722 - AO353_07735 0.89 +0.2
1,704,722 - AO353_07735 0.89 -0.1
1,704,722 - AO353_07735 0.89 -0.2
1,704,722 - AO353_07735 0.89 -1.0
1,704,811 + +0.5
1,704,812 - +1.0
1,704,866 + +2.0
1,704,867 - -0.6
1,704,867 - -1.5
1,704,956 + -1.4
1,704,956 + -0.5
1,704,998 - +0.4
1,705,196 - AO353_07740 0.19 +0.6
1,705,390 + AO353_07740 0.39 +1.0
1,705,390 + AO353_07740 0.39 -1.8
1,705,390 + AO353_07740 0.39 -0.5
1,705,390 + AO353_07740 0.39 -0.1
1,705,391 - AO353_07740 0.39 -2.0
1,705,462 + AO353_07740 0.47 -0.5
1,705,463 - AO353_07740 0.47 -0.2
1,705,463 - AO353_07740 0.47 -0.5
1,705,463 - AO353_07740 0.47 -1.4
1,705,666 + AO353_07740 0.68 -0.1
1,705,666 + AO353_07740 0.68 -0.0
1,705,666 + AO353_07740 0.68 +0.8
1,705,666 + AO353_07740 0.68 +0.1
1,705,666 + AO353_07740 0.68 -2.1
1,705,667 - AO353_07740 0.68 -0.3
1,705,667 - AO353_07740 0.68 -0.3
1,705,741 + AO353_07740 0.76 +0.4
1,705,741 + AO353_07740 0.76 -0.7
1,705,741 + AO353_07740 0.76 -1.4
1,705,741 + AO353_07740 0.76 -0.4
1,705,741 + AO353_07740 0.76 +0.4
1,705,963 + +0.2
1,705,963 + +0.6
1,705,964 - -1.2
1,706,244 + AO353_07745 0.22 +1.2
1,706,245 - AO353_07745 0.22 +0.7
1,706,475 + AO353_07745 0.48 -0.7
1,706,475 + AO353_07745 0.48 +0.5
1,706,475 + AO353_07745 0.48 +1.3
1,706,475 + AO353_07745 0.48 +0.5
1,706,475 + AO353_07745 0.48 -0.7
1,706,475 + AO353_07745 0.48 -0.3
1,706,476 - AO353_07745 0.48 +0.0
1,706,476 - AO353_07745 0.48 -0.1
1,706,476 - AO353_07745 0.48 -0.8
1,706,476 - AO353_07745 0.48 -0.9
1,706,476 - AO353_07745 0.48 +2.0
1,706,476 - AO353_07745 0.48 +1.5
1,706,476 - AO353_07745 0.48 -0.0
1,706,476 - AO353_07745 0.48 -0.5
1,706,476 - AO353_07745 0.48 -1.2
1,706,476 - AO353_07745 0.48 -0.3
1,706,476 - AO353_07745 0.48 -1.7
1,706,953 + -0.5
1,706,953 + -0.4
1,706,953 + -0.5
1,706,953 + -0.2
1,706,953 + -1.1
1,706,953 + +0.0
1,706,953 + +0.7
1,706,954 - +0.8
1,706,954 - -0.1
1,706,954 - +0.5
1,706,954 - +1.2
1,706,954 - -1.3
1,706,954 - -0.1
1,706,954 - +0.5
1,706,954 - -1.3
1,706,954 - +0.1
1,706,954 - -0.1
1,706,962 + -0.9
1,706,962 + +0.1
1,706,962 + -0.1
1,706,962 + +0.2
1,706,963 - +0.8
1,706,963 - -0.1
1,706,963 - +0.2
1,706,963 - +0.5
1,706,963 - -0.5
1,706,963 - -0.5
1,706,963 - +0.3

Or see this region's nucleotide sequence