Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16860

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS16850 and ABZR86_RS16855 are separated by 97 nucleotidesABZR86_RS16855 and ABZR86_RS16860 overlap by 4 nucleotidesABZR86_RS16860 and ABZR86_RS16865 are separated by 109 nucleotidesABZR86_RS16865 and ABZR86_RS16870 overlap by 1 nucleotides ABZR86_RS16850: ABZR86_RS16850 - DsbA family oxidoreductase, at 3,804,458 to 3,805,105 _RS16850 ABZR86_RS16855: ABZR86_RS16855 - DUF1993 family protein, at 3,805,203 to 3,805,709 _RS16855 ABZR86_RS16860: ABZR86_RS16860 - TCR/Tet family MFS transporter, at 3,805,706 to 3,807,070 _RS16860 ABZR86_RS16865: ABZR86_RS16865 - EF-hand domain-containing protein, at 3,807,180 to 3,807,515 _RS16865 ABZR86_RS16870: ABZR86_RS16870 - GTP cyclohydrolase I FolE, at 3,807,515 to 3,808,114 _RS16870 Position (kb) 3805 3806 3807 3808Strain fitness (log2 ratio) -2 -1 0 1 2at 3804.720 kb on + strand, within ABZR86_RS16850at 3804.721 kb on - strand, within ABZR86_RS16850at 3804.807 kb on + strand, within ABZR86_RS16850at 3804.807 kb on + strand, within ABZR86_RS16850at 3804.807 kb on + strand, within ABZR86_RS16850at 3804.807 kb on + strand, within ABZR86_RS16850at 3804.807 kb on + strand, within ABZR86_RS16850at 3804.807 kb on + strand, within ABZR86_RS16850at 3804.808 kb on - strand, within ABZR86_RS16850at 3804.808 kb on - strand, within ABZR86_RS16850at 3804.909 kb on + strand, within ABZR86_RS16850at 3804.909 kb on + strand, within ABZR86_RS16850at 3804.910 kb on - strand, within ABZR86_RS16850at 3804.910 kb on - strand, within ABZR86_RS16850at 3805.204 kb on + strandat 3805.204 kb on + strandat 3805.204 kb on + strandat 3805.204 kb on + strandat 3805.204 kb on + strandat 3805.204 kb on + strandat 3805.204 kb on + strandat 3805.205 kb on - strandat 3805.205 kb on - strandat 3805.205 kb on - strandat 3805.205 kb on - strandat 3805.205 kb on - strandat 3805.205 kb on - strandat 3805.264 kb on + strand, within ABZR86_RS16855at 3805.265 kb on - strand, within ABZR86_RS16855at 3805.315 kb on + strand, within ABZR86_RS16855at 3805.316 kb on - strand, within ABZR86_RS16855at 3805.316 kb on - strand, within ABZR86_RS16855at 3805.414 kb on + strand, within ABZR86_RS16855at 3805.414 kb on + strand, within ABZR86_RS16855at 3805.414 kb on + strand, within ABZR86_RS16855at 3805.414 kb on + strand, within ABZR86_RS16855at 3805.415 kb on - strand, within ABZR86_RS16855at 3805.415 kb on - strand, within ABZR86_RS16855at 3805.415 kb on - strand, within ABZR86_RS16855at 3805.441 kb on + strand, within ABZR86_RS16855at 3805.442 kb on - strand, within ABZR86_RS16855at 3805.442 kb on - strand, within ABZR86_RS16855at 3805.693 kb on + strandat 3805.693 kb on + strandat 3805.693 kb on + strandat 3805.694 kb on - strandat 3805.694 kb on - strandat 3805.694 kb on - strandat 3806.314 kb on - strand, within ABZR86_RS16860at 3806.322 kb on + strand, within ABZR86_RS16860at 3806.323 kb on - strand, within ABZR86_RS16860at 3806.349 kb on + strand, within ABZR86_RS16860at 3806.349 kb on + strand, within ABZR86_RS16860at 3806.349 kb on + strand, within ABZR86_RS16860at 3806.350 kb on - strand, within ABZR86_RS16860at 3806.350 kb on - strand, within ABZR86_RS16860at 3806.350 kb on - strand, within ABZR86_RS16860at 3806.362 kb on - strand, within ABZR86_RS16860at 3806.362 kb on - strand, within ABZR86_RS16860at 3806.362 kb on - strand, within ABZR86_RS16860at 3806.558 kb on + strand, within ABZR86_RS16860at 3806.559 kb on - strand, within ABZR86_RS16860at 3806.679 kb on + strand, within ABZR86_RS16860at 3806.680 kb on - strand, within ABZR86_RS16860at 3807.161 kb on + strandat 3807.162 kb on - strandat 3807.373 kb on + strand, within ABZR86_RS16865at 3807.373 kb on + strand, within ABZR86_RS16865at 3807.373 kb on + strand, within ABZR86_RS16865at 3807.374 kb on - strand, within ABZR86_RS16865at 3807.374 kb on - strand, within ABZR86_RS16865at 3807.374 kb on - strand, within ABZR86_RS16865at 3807.382 kb on + strand, within ABZR86_RS16865at 3807.382 kb on + strand, within ABZR86_RS16865at 3807.382 kb on + strand, within ABZR86_RS16865at 3807.382 kb on + strand, within ABZR86_RS16865at 3807.383 kb on - strand, within ABZR86_RS16865at 3807.383 kb on - strand, within ABZR86_RS16865at 3807.433 kb on + strand, within ABZR86_RS16865

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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3,804,720 + ABZR86_RS16850 0.40 +0.7
3,804,721 - ABZR86_RS16850 0.41 -0.3
3,804,807 + ABZR86_RS16850 0.54 +0.0
3,804,807 + ABZR86_RS16850 0.54 -0.3
3,804,807 + ABZR86_RS16850 0.54 +0.1
3,804,807 + ABZR86_RS16850 0.54 +0.5
3,804,807 + ABZR86_RS16850 0.54 -0.3
3,804,807 + ABZR86_RS16850 0.54 -0.2
3,804,808 - ABZR86_RS16850 0.54 +0.5
3,804,808 - ABZR86_RS16850 0.54 +0.2
3,804,909 + ABZR86_RS16850 0.70 -0.5
3,804,909 + ABZR86_RS16850 0.70 -0.4
3,804,910 - ABZR86_RS16850 0.70 -0.5
3,804,910 - ABZR86_RS16850 0.70 +0.8
3,805,204 + +0.1
3,805,204 + +0.3
3,805,204 + -0.4
3,805,204 + +0.4
3,805,204 + -0.2
3,805,204 + -0.9
3,805,204 + -0.4
3,805,205 - +0.3
3,805,205 - +0.3
3,805,205 - +0.0
3,805,205 - +0.1
3,805,205 - -0.1
3,805,205 - +0.7
3,805,264 + ABZR86_RS16855 0.12 +0.4
3,805,265 - ABZR86_RS16855 0.12 -0.6
3,805,315 + ABZR86_RS16855 0.22 -0.0
3,805,316 - ABZR86_RS16855 0.22 -0.1
3,805,316 - ABZR86_RS16855 0.22 -0.5
3,805,414 + ABZR86_RS16855 0.42 -2.1
3,805,414 + ABZR86_RS16855 0.42 -0.5
3,805,414 + ABZR86_RS16855 0.42 -0.0
3,805,414 + ABZR86_RS16855 0.42 -1.0
3,805,415 - ABZR86_RS16855 0.42 -0.1
3,805,415 - ABZR86_RS16855 0.42 +0.2
3,805,415 - ABZR86_RS16855 0.42 -0.4
3,805,441 + ABZR86_RS16855 0.47 -0.1
3,805,442 - ABZR86_RS16855 0.47 +0.3
3,805,442 - ABZR86_RS16855 0.47 -0.0
3,805,693 + +0.3
3,805,693 + +0.3
3,805,693 + -0.4
3,805,694 - -0.3
3,805,694 - +0.1
3,805,694 - -0.3
3,806,314 - ABZR86_RS16860 0.45 +0.2
3,806,322 + ABZR86_RS16860 0.45 -0.3
3,806,323 - ABZR86_RS16860 0.45 -0.2
3,806,349 + ABZR86_RS16860 0.47 +0.8
3,806,349 + ABZR86_RS16860 0.47 -0.3
3,806,349 + ABZR86_RS16860 0.47 +0.8
3,806,350 - ABZR86_RS16860 0.47 +0.3
3,806,350 - ABZR86_RS16860 0.47 +0.5
3,806,350 - ABZR86_RS16860 0.47 -0.4
3,806,362 - ABZR86_RS16860 0.48 +2.7
3,806,362 - ABZR86_RS16860 0.48 +0.5
3,806,362 - ABZR86_RS16860 0.48 -0.0
3,806,558 + ABZR86_RS16860 0.62 +0.4
3,806,559 - ABZR86_RS16860 0.62 +0.1
3,806,679 + ABZR86_RS16860 0.71 -0.8
3,806,680 - ABZR86_RS16860 0.71 -0.2
3,807,161 + +0.6
3,807,162 - -0.1
3,807,373 + ABZR86_RS16865 0.57 -1.4
3,807,373 + ABZR86_RS16865 0.57 +0.2
3,807,373 + ABZR86_RS16865 0.57 +0.2
3,807,374 - ABZR86_RS16865 0.58 +0.4
3,807,374 - ABZR86_RS16865 0.58 +0.1
3,807,374 - ABZR86_RS16865 0.58 +0.8
3,807,382 + ABZR86_RS16865 0.60 -0.0
3,807,382 + ABZR86_RS16865 0.60 +0.3
3,807,382 + ABZR86_RS16865 0.60 +0.3
3,807,382 + ABZR86_RS16865 0.60 -0.1
3,807,383 - ABZR86_RS16865 0.60 +1.0
3,807,383 - ABZR86_RS16865 0.60 -0.2
3,807,433 + ABZR86_RS16865 0.75 -0.1

Or see this region's nucleotide sequence