Experiment: Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS16615 and ABZR86_RS16620 are separated by 34 nucleotides ABZR86_RS16620 and ABZR86_RS16625 are separated by 12 nucleotides ABZR86_RS16625 and ABZR86_RS16630 are separated by 55 nucleotides ABZR86_RS16630 and ABZR86_RS16635 are separated by 110 nucleotides
ABZR86_RS16615: ABZR86_RS16615 - ankyrin repeat domain-containing protein, at 3,753,548 to 3,754,192
_RS16615
ABZR86_RS16620: ABZR86_RS16620 - hypothetical protein, at 3,754,227 to 3,754,691
_RS16620
ABZR86_RS16625: ABZR86_RS16625 - hypothetical protein, at 3,754,704 to 3,755,165
_RS16625
ABZR86_RS16630: ABZR86_RS16630 - energy transducer TonB, at 3,755,221 to 3,755,628
_RS16630
ABZR86_RS16635: ABZR86_RS16635 - energy transducer TonB, at 3,755,739 to 3,756,140
_RS16635
Position (kb)
3754
3755
3756 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3753.707 kb on + strand, within ABZR86_RS16615 at 3753.767 kb on + strand, within ABZR86_RS16615 at 3753.807 kb on + strand, within ABZR86_RS16615 at 3753.901 kb on - strand, within ABZR86_RS16615 at 3753.901 kb on - strand, within ABZR86_RS16615 at 3754.029 kb on - strand, within ABZR86_RS16615 at 3754.097 kb on + strand, within ABZR86_RS16615 at 3754.186 kb on + strand at 3754.186 kb on + strand at 3754.220 kb on + strand at 3754.220 kb on + strand at 3754.221 kb on - strand at 3754.450 kb on - strand, within ABZR86_RS16620 at 3754.677 kb on + strand at 3754.677 kb on + strand at 3754.677 kb on + strand at 3754.677 kb on + strand at 3754.677 kb on + strand at 3754.677 kb on + strand at 3754.678 kb on - strand at 3754.678 kb on - strand at 3754.678 kb on - strand at 3754.689 kb on + strand at 3754.690 kb on - strand at 3754.818 kb on + strand, within ABZR86_RS16625 at 3754.838 kb on + strand, within ABZR86_RS16625 at 3754.850 kb on + strand, within ABZR86_RS16625 at 3754.851 kb on - strand, within ABZR86_RS16625 at 3754.852 kb on + strand, within ABZR86_RS16625 at 3754.852 kb on + strand, within ABZR86_RS16625 at 3754.871 kb on + strand, within ABZR86_RS16625 at 3754.872 kb on - strand, within ABZR86_RS16625 at 3754.959 kb on - strand, within ABZR86_RS16625 at 3754.959 kb on - strand, within ABZR86_RS16625 at 3754.981 kb on - strand, within ABZR86_RS16625 at 3755.046 kb on + strand, within ABZR86_RS16625 at 3755.046 kb on + strand, within ABZR86_RS16625 at 3755.047 kb on - strand, within ABZR86_RS16625 at 3755.047 kb on - strand, within ABZR86_RS16625 at 3755.086 kb on - strand, within ABZR86_RS16625 at 3755.086 kb on - strand, within ABZR86_RS16625 at 3755.119 kb on - strand at 3755.164 kb on - strand at 3755.168 kb on + strand at 3755.168 kb on + strand at 3755.169 kb on - strand at 3755.172 kb on + strand at 3755.199 kb on - strand at 3755.216 kb on + strand at 3755.319 kb on - strand, within ABZR86_RS16630 at 3755.327 kb on + strand, within ABZR86_RS16630 at 3755.328 kb on - strand, within ABZR86_RS16630 at 3755.494 kb on + strand, within ABZR86_RS16630 at 3755.578 kb on + strand, within ABZR86_RS16630 at 3755.643 kb on + strand at 3755.853 kb on + strand, within ABZR86_RS16635 at 3755.854 kb on - strand, within ABZR86_RS16635 at 3755.998 kb on + strand, within ABZR86_RS16635 at 3755.998 kb on + strand, within ABZR86_RS16635 at 3756.012 kb on + strand, within ABZR86_RS16635 at 3756.064 kb on - strand, within ABZR86_RS16635 at 3756.085 kb on - strand, within ABZR86_RS16635 at 3756.114 kb on - strand at 3756.114 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol% remove 3,753,707 + ABZR86_RS16615 0.25 -2.7 3,753,767 + ABZR86_RS16615 0.34 +1.9 3,753,807 + ABZR86_RS16615 0.40 -0.5 3,753,901 - ABZR86_RS16615 0.55 -0.4 3,753,901 - ABZR86_RS16615 0.55 -0.1 3,754,029 - ABZR86_RS16615 0.75 -0.7 3,754,097 + ABZR86_RS16615 0.85 -0.6 3,754,186 + +0.1 3,754,186 + +0.3 3,754,220 + -0.1 3,754,220 + +1.0 3,754,221 - -0.1 3,754,450 - ABZR86_RS16620 0.48 -0.4 3,754,677 + -0.2 3,754,677 + -0.2 3,754,677 + -0.0 3,754,677 + -0.5 3,754,677 + +0.6 3,754,677 + -0.1 3,754,678 - -0.1 3,754,678 - +0.3 3,754,678 - -0.0 3,754,689 + -0.4 3,754,690 - +0.5 3,754,818 + ABZR86_RS16625 0.25 +0.4 3,754,838 + ABZR86_RS16625 0.29 -0.2 3,754,850 + ABZR86_RS16625 0.32 -0.6 3,754,851 - ABZR86_RS16625 0.32 +0.4 3,754,852 + ABZR86_RS16625 0.32 -0.3 3,754,852 + ABZR86_RS16625 0.32 +0.2 3,754,871 + ABZR86_RS16625 0.36 +0.5 3,754,872 - ABZR86_RS16625 0.36 +0.1 3,754,959 - ABZR86_RS16625 0.55 -0.8 3,754,959 - ABZR86_RS16625 0.55 -0.4 3,754,981 - ABZR86_RS16625 0.60 -0.9 3,755,046 + ABZR86_RS16625 0.74 +0.1 3,755,046 + ABZR86_RS16625 0.74 -0.0 3,755,047 - ABZR86_RS16625 0.74 +0.1 3,755,047 - ABZR86_RS16625 0.74 +0.2 3,755,086 - ABZR86_RS16625 0.83 +0.1 3,755,086 - ABZR86_RS16625 0.83 -0.9 3,755,119 - -0.1 3,755,164 - +0.1 3,755,168 + +0.3 3,755,168 + +0.7 3,755,169 - +0.3 3,755,172 + -1.1 3,755,199 - -0.2 3,755,216 + +0.5 3,755,319 - ABZR86_RS16630 0.24 -0.2 3,755,327 + ABZR86_RS16630 0.26 -2.2 3,755,328 - ABZR86_RS16630 0.26 +1.0 3,755,494 + ABZR86_RS16630 0.67 -0.2 3,755,578 + ABZR86_RS16630 0.88 +0.3 3,755,643 + -0.1 3,755,853 + ABZR86_RS16635 0.28 -0.2 3,755,854 - ABZR86_RS16635 0.29 -0.2 3,755,998 + ABZR86_RS16635 0.64 -0.9 3,755,998 + ABZR86_RS16635 0.64 -0.2 3,756,012 + ABZR86_RS16635 0.68 -0.5 3,756,064 - ABZR86_RS16635 0.81 +0.1 3,756,085 - ABZR86_RS16635 0.86 -0.3 3,756,114 - -0.2 3,756,114 - +0.1
Or see this region's nucleotide sequence