Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS15945

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS15940 and ABZR86_RS15945 overlap by 4 nucleotidesABZR86_RS15945 and ABZR86_RS15950 are separated by 195 nucleotides ABZR86_RS15940: ABZR86_RS15940 - ketol-acid reductoisomerase, at 3,591,599 to 3,592,618 _RS15940 ABZR86_RS15945: ABZR86_RS15945 - dihydroxy-acid dehydratase, at 3,592,615 to 3,594,321 _RS15945 ABZR86_RS15950: ABZR86_RS15950 - 3-isopropylmalate dehydrogenase, at 3,594,517 to 3,595,614 _RS15950 Position (kb) 3592 3593 3594 3595Strain fitness (log2 ratio) -1 0 1at 3591.729 kb on + strand, within ABZR86_RS15940at 3591.729 kb on + strand, within ABZR86_RS15940at 3591.729 kb on + strand, within ABZR86_RS15940at 3591.730 kb on - strand, within ABZR86_RS15940at 3591.730 kb on - strand, within ABZR86_RS15940at 3591.856 kb on - strand, within ABZR86_RS15940at 3591.864 kb on + strand, within ABZR86_RS15940at 3591.915 kb on + strand, within ABZR86_RS15940at 3591.915 kb on + strand, within ABZR86_RS15940at 3591.916 kb on - strand, within ABZR86_RS15940at 3591.957 kb on + strand, within ABZR86_RS15940at 3591.957 kb on + strand, within ABZR86_RS15940at 3591.958 kb on - strand, within ABZR86_RS15940at 3591.958 kb on - strand, within ABZR86_RS15940at 3591.958 kb on - strand, within ABZR86_RS15940at 3591.961 kb on - strand, within ABZR86_RS15940at 3591.961 kb on - strand, within ABZR86_RS15940at 3591.978 kb on + strand, within ABZR86_RS15940at 3592.132 kb on - strand, within ABZR86_RS15940at 3592.365 kb on + strand, within ABZR86_RS15940at 3592.365 kb on + strand, within ABZR86_RS15940at 3592.366 kb on - strand, within ABZR86_RS15940at 3592.366 kb on - strand, within ABZR86_RS15940at 3592.686 kb on + strandat 3592.687 kb on - strandat 3592.724 kb on + strandat 3592.725 kb on - strandat 3592.725 kb on - strandat 3593.193 kb on - strand, within ABZR86_RS15945at 3593.193 kb on - strand, within ABZR86_RS15945at 3593.394 kb on + strand, within ABZR86_RS15945at 3593.397 kb on - strand, within ABZR86_RS15945at 3593.901 kb on - strand, within ABZR86_RS15945at 3594.207 kb on + strandat 3594.207 kb on + strandat 3594.208 kb on - strandat 3594.346 kb on + strandat 3594.347 kb on - strandat 3594.347 kb on - strandat 3594.923 kb on + strand, within ABZR86_RS15950at 3594.923 kb on + strand, within ABZR86_RS15950at 3594.924 kb on - strand, within ABZR86_RS15950at 3595.142 kb on + strand, within ABZR86_RS15950at 3595.142 kb on + strand, within ABZR86_RS15950at 3595.143 kb on - strand, within ABZR86_RS15950at 3595.143 kb on - strand, within ABZR86_RS15950at 3595.143 kb on - strand, within ABZR86_RS15950at 3595.164 kb on + strand, within ABZR86_RS15950at 3595.194 kb on - strand, within ABZR86_RS15950at 3595.311 kb on - strand, within ABZR86_RS15950

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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3,591,729 + ABZR86_RS15940 0.13 +0.4
3,591,729 + ABZR86_RS15940 0.13 -0.1
3,591,729 + ABZR86_RS15940 0.13 -0.1
3,591,730 - ABZR86_RS15940 0.13 -1.5
3,591,730 - ABZR86_RS15940 0.13 +0.3
3,591,856 - ABZR86_RS15940 0.25 +0.6
3,591,864 + ABZR86_RS15940 0.26 -0.1
3,591,915 + ABZR86_RS15940 0.31 -0.3
3,591,915 + ABZR86_RS15940 0.31 +0.0
3,591,916 - ABZR86_RS15940 0.31 -0.2
3,591,957 + ABZR86_RS15940 0.35 -1.1
3,591,957 + ABZR86_RS15940 0.35 -0.1
3,591,958 - ABZR86_RS15940 0.35 +0.3
3,591,958 - ABZR86_RS15940 0.35 +0.5
3,591,958 - ABZR86_RS15940 0.35 +0.2
3,591,961 - ABZR86_RS15940 0.35 -0.4
3,591,961 - ABZR86_RS15940 0.35 -0.1
3,591,978 + ABZR86_RS15940 0.37 -0.5
3,592,132 - ABZR86_RS15940 0.52 +0.4
3,592,365 + ABZR86_RS15940 0.75 -1.0
3,592,365 + ABZR86_RS15940 0.75 -0.3
3,592,366 - ABZR86_RS15940 0.75 +0.6
3,592,366 - ABZR86_RS15940 0.75 +0.0
3,592,686 + -0.6
3,592,687 - +0.1
3,592,724 + -0.2
3,592,725 - +1.1
3,592,725 - -0.0
3,593,193 - ABZR86_RS15945 0.34 -0.1
3,593,193 - ABZR86_RS15945 0.34 +0.0
3,593,394 + ABZR86_RS15945 0.46 +0.7
3,593,397 - ABZR86_RS15945 0.46 -0.3
3,593,901 - ABZR86_RS15945 0.75 -0.7
3,594,207 + +0.5
3,594,207 + -0.1
3,594,208 - -0.2
3,594,346 + +0.1
3,594,347 - +0.5
3,594,347 - +0.0
3,594,923 + ABZR86_RS15950 0.37 +0.2
3,594,923 + ABZR86_RS15950 0.37 -0.6
3,594,924 - ABZR86_RS15950 0.37 -0.1
3,595,142 + ABZR86_RS15950 0.57 -0.0
3,595,142 + ABZR86_RS15950 0.57 +0.6
3,595,143 - ABZR86_RS15950 0.57 -0.8
3,595,143 - ABZR86_RS15950 0.57 -0.8
3,595,143 - ABZR86_RS15950 0.57 +0.1
3,595,164 + ABZR86_RS15950 0.59 -0.4
3,595,194 - ABZR86_RS15950 0.62 +0.0
3,595,311 - ABZR86_RS15950 0.72 +0.0

Or see this region's nucleotide sequence