Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS15225

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS15220 and ABZR86_RS15225 are separated by 62 nucleotidesABZR86_RS15225 and ABZR86_RS15230 are separated by 46 nucleotides ABZR86_RS15220: ABZR86_RS15220 - hypothetical protein, at 3,427,990 to 3,430,209 _RS15220 ABZR86_RS15225: ABZR86_RS15225 - PA0069 family radical SAM protein, at 3,430,272 to 3,431,351 _RS15225 ABZR86_RS15230: ABZR86_RS15230 - PA0069 family radical SAM protein, at 3,431,398 to 3,432,507 _RS15230 Position (kb) 3430 3431 3432Strain fitness (log2 ratio) -1 0 1at 3429.400 kb on + strand, within ABZR86_RS15220at 3429.432 kb on + strand, within ABZR86_RS15220at 3429.613 kb on + strand, within ABZR86_RS15220at 3429.613 kb on + strand, within ABZR86_RS15220at 3429.613 kb on + strand, within ABZR86_RS15220at 3429.613 kb on + strand, within ABZR86_RS15220at 3429.613 kb on + strand, within ABZR86_RS15220at 3429.613 kb on + strand, within ABZR86_RS15220at 3429.613 kb on + strand, within ABZR86_RS15220at 3429.613 kb on + strand, within ABZR86_RS15220at 3429.614 kb on - strand, within ABZR86_RS15220at 3429.614 kb on - strand, within ABZR86_RS15220at 3429.614 kb on - strand, within ABZR86_RS15220at 3429.614 kb on - strand, within ABZR86_RS15220at 3429.614 kb on - strand, within ABZR86_RS15220at 3429.614 kb on - strand, within ABZR86_RS15220at 3429.614 kb on - strand, within ABZR86_RS15220at 3429.614 kb on - strand, within ABZR86_RS15220at 3429.614 kb on - strand, within ABZR86_RS15220at 3429.614 kb on - strand, within ABZR86_RS15220at 3429.614 kb on - strand, within ABZR86_RS15220at 3429.614 kb on - strand, within ABZR86_RS15220at 3429.614 kb on - strand, within ABZR86_RS15220at 3429.703 kb on + strand, within ABZR86_RS15220at 3429.704 kb on - strand, within ABZR86_RS15220at 3429.804 kb on + strand, within ABZR86_RS15220at 3429.804 kb on + strand, within ABZR86_RS15220at 3429.805 kb on - strand, within ABZR86_RS15220at 3429.805 kb on - strand, within ABZR86_RS15220at 3429.805 kb on - strand, within ABZR86_RS15220at 3429.805 kb on - strand, within ABZR86_RS15220at 3429.805 kb on - strand, within ABZR86_RS15220at 3429.871 kb on + strand, within ABZR86_RS15220at 3429.872 kb on - strand, within ABZR86_RS15220at 3429.872 kb on - strand, within ABZR86_RS15220at 3429.986 kb on - strand, within ABZR86_RS15220at 3430.017 kb on + strandat 3430.017 kb on + strandat 3430.018 kb on - strandat 3430.153 kb on + strandat 3430.154 kb on - strandat 3430.154 kb on - strandat 3430.356 kb on + strandat 3430.356 kb on + strandat 3430.356 kb on + strandat 3430.356 kb on + strandat 3430.380 kb on + strand, within ABZR86_RS15225at 3430.380 kb on + strand, within ABZR86_RS15225at 3430.381 kb on - strand, within ABZR86_RS15225at 3430.381 kb on - strand, within ABZR86_RS15225at 3430.381 kb on - strand, within ABZR86_RS15225at 3430.381 kb on - strand, within ABZR86_RS15225at 3430.497 kb on + strand, within ABZR86_RS15225at 3430.498 kb on - strand, within ABZR86_RS15225at 3430.498 kb on - strand, within ABZR86_RS15225at 3430.524 kb on + strand, within ABZR86_RS15225at 3430.524 kb on + strand, within ABZR86_RS15225at 3430.551 kb on + strand, within ABZR86_RS15225at 3430.551 kb on + strand, within ABZR86_RS15225at 3430.648 kb on - strand, within ABZR86_RS15225at 3430.680 kb on - strand, within ABZR86_RS15225at 3430.689 kb on + strand, within ABZR86_RS15225at 3430.690 kb on - strand, within ABZR86_RS15225at 3430.690 kb on - strand, within ABZR86_RS15225at 3430.690 kb on - strand, within ABZR86_RS15225at 3430.690 kb on - strand, within ABZR86_RS15225at 3430.711 kb on - strand, within ABZR86_RS15225at 3430.711 kb on - strand, within ABZR86_RS15225at 3430.845 kb on + strand, within ABZR86_RS15225at 3430.845 kb on + strand, within ABZR86_RS15225at 3430.845 kb on + strand, within ABZR86_RS15225at 3430.845 kb on + strand, within ABZR86_RS15225at 3430.845 kb on + strand, within ABZR86_RS15225at 3430.845 kb on + strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3431.058 kb on + strand, within ABZR86_RS15225at 3431.058 kb on + strand, within ABZR86_RS15225at 3431.058 kb on + strand, within ABZR86_RS15225at 3431.058 kb on + strand, within ABZR86_RS15225at 3431.058 kb on + strand, within ABZR86_RS15225at 3431.059 kb on - strand, within ABZR86_RS15225at 3431.121 kb on + strand, within ABZR86_RS15225at 3431.181 kb on + strand, within ABZR86_RS15225at 3431.181 kb on + strand, within ABZR86_RS15225at 3431.259 kb on + strandat 3431.260 kb on - strandat 3431.260 kb on - strandat 3431.260 kb on - strandat 3431.260 kb on - strandat 3431.349 kb on + strandat 3431.674 kb on + strand, within ABZR86_RS15230at 3431.674 kb on + strand, within ABZR86_RS15230at 3431.674 kb on + strand, within ABZR86_RS15230at 3431.674 kb on + strand, within ABZR86_RS15230at 3431.675 kb on - strand, within ABZR86_RS15230at 3431.675 kb on - strand, within ABZR86_RS15230at 3431.675 kb on - strand, within ABZR86_RS15230at 3431.701 kb on + strand, within ABZR86_RS15230at 3431.701 kb on + strand, within ABZR86_RS15230at 3431.702 kb on - strand, within ABZR86_RS15230at 3431.702 kb on - strand, within ABZR86_RS15230at 3431.798 kb on - strand, within ABZR86_RS15230at 3431.798 kb on - strand, within ABZR86_RS15230at 3431.839 kb on + strand, within ABZR86_RS15230at 3431.839 kb on + strand, within ABZR86_RS15230at 3431.839 kb on + strand, within ABZR86_RS15230at 3431.839 kb on + strand, within ABZR86_RS15230at 3432.208 kb on + strand, within ABZR86_RS15230at 3432.209 kb on - strand, within ABZR86_RS15230at 3432.331 kb on + strand, within ABZR86_RS15230at 3432.331 kb on + strand, within ABZR86_RS15230at 3432.332 kb on - strand, within ABZR86_RS15230

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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3,429,400 + ABZR86_RS15220 0.64 -0.5
3,429,432 + ABZR86_RS15220 0.65 -0.2
3,429,613 + ABZR86_RS15220 0.73 -0.2
3,429,613 + ABZR86_RS15220 0.73 +0.7
3,429,613 + ABZR86_RS15220 0.73 +0.1
3,429,613 + ABZR86_RS15220 0.73 +0.4
3,429,613 + ABZR86_RS15220 0.73 -0.5
3,429,613 + ABZR86_RS15220 0.73 -0.3
3,429,613 + ABZR86_RS15220 0.73 +0.1
3,429,613 + ABZR86_RS15220 0.73 -0.0
3,429,614 - ABZR86_RS15220 0.73 -0.4
3,429,614 - ABZR86_RS15220 0.73 +1.0
3,429,614 - ABZR86_RS15220 0.73 -0.1
3,429,614 - ABZR86_RS15220 0.73 -0.2
3,429,614 - ABZR86_RS15220 0.73 +0.1
3,429,614 - ABZR86_RS15220 0.73 -0.3
3,429,614 - ABZR86_RS15220 0.73 +0.5
3,429,614 - ABZR86_RS15220 0.73 +0.3
3,429,614 - ABZR86_RS15220 0.73 -0.1
3,429,614 - ABZR86_RS15220 0.73 -0.5
3,429,614 - ABZR86_RS15220 0.73 +0.2
3,429,614 - ABZR86_RS15220 0.73 +0.1
3,429,614 - ABZR86_RS15220 0.73 -0.2
3,429,703 + ABZR86_RS15220 0.77 -0.1
3,429,704 - ABZR86_RS15220 0.77 +0.1
3,429,804 + ABZR86_RS15220 0.82 -0.4
3,429,804 + ABZR86_RS15220 0.82 -0.3
3,429,805 - ABZR86_RS15220 0.82 +0.4
3,429,805 - ABZR86_RS15220 0.82 +0.1
3,429,805 - ABZR86_RS15220 0.82 +0.2
3,429,805 - ABZR86_RS15220 0.82 +0.4
3,429,805 - ABZR86_RS15220 0.82 +0.5
3,429,871 + ABZR86_RS15220 0.85 +1.0
3,429,872 - ABZR86_RS15220 0.85 +0.3
3,429,872 - ABZR86_RS15220 0.85 +0.8
3,429,986 - ABZR86_RS15220 0.90 -1.0
3,430,017 + +0.6
3,430,017 + +0.1
3,430,018 - -1.0
3,430,153 + -0.5
3,430,154 - -0.3
3,430,154 - +0.3
3,430,356 + +0.8
3,430,356 + -0.5
3,430,356 + +0.1
3,430,356 + +0.1
3,430,380 + ABZR86_RS15225 0.10 +0.2
3,430,380 + ABZR86_RS15225 0.10 +0.8
3,430,381 - ABZR86_RS15225 0.10 +0.9
3,430,381 - ABZR86_RS15225 0.10 +0.4
3,430,381 - ABZR86_RS15225 0.10 +0.4
3,430,381 - ABZR86_RS15225 0.10 +0.2
3,430,497 + ABZR86_RS15225 0.21 -0.1
3,430,498 - ABZR86_RS15225 0.21 -0.6
3,430,498 - ABZR86_RS15225 0.21 -0.9
3,430,524 + ABZR86_RS15225 0.23 -0.2
3,430,524 + ABZR86_RS15225 0.23 -0.2
3,430,551 + ABZR86_RS15225 0.26 +0.1
3,430,551 + ABZR86_RS15225 0.26 +0.5
3,430,648 - ABZR86_RS15225 0.35 -0.2
3,430,680 - ABZR86_RS15225 0.38 -0.3
3,430,689 + ABZR86_RS15225 0.39 -0.9
3,430,690 - ABZR86_RS15225 0.39 +1.2
3,430,690 - ABZR86_RS15225 0.39 -0.2
3,430,690 - ABZR86_RS15225 0.39 -0.2
3,430,690 - ABZR86_RS15225 0.39 -1.1
3,430,711 - ABZR86_RS15225 0.41 +0.5
3,430,711 - ABZR86_RS15225 0.41 -0.4
3,430,845 + ABZR86_RS15225 0.53 +0.2
3,430,845 + ABZR86_RS15225 0.53 -0.5
3,430,845 + ABZR86_RS15225 0.53 +0.0
3,430,845 + ABZR86_RS15225 0.53 -0.1
3,430,845 + ABZR86_RS15225 0.53 -0.3
3,430,845 + ABZR86_RS15225 0.53 +0.1
3,430,846 - ABZR86_RS15225 0.53 +0.2
3,430,846 - ABZR86_RS15225 0.53 -0.6
3,430,846 - ABZR86_RS15225 0.53 +0.6
3,430,846 - ABZR86_RS15225 0.53 -0.0
3,430,846 - ABZR86_RS15225 0.53 -0.4
3,430,846 - ABZR86_RS15225 0.53 +0.6
3,430,846 - ABZR86_RS15225 0.53 +0.5
3,431,058 + ABZR86_RS15225 0.73 -0.2
3,431,058 + ABZR86_RS15225 0.73 -0.7
3,431,058 + ABZR86_RS15225 0.73 +0.6
3,431,058 + ABZR86_RS15225 0.73 -0.6
3,431,058 + ABZR86_RS15225 0.73 -0.4
3,431,059 - ABZR86_RS15225 0.73 +0.6
3,431,121 + ABZR86_RS15225 0.79 -0.1
3,431,181 + ABZR86_RS15225 0.84 -0.6
3,431,181 + ABZR86_RS15225 0.84 +0.5
3,431,259 + -0.3
3,431,260 - -0.5
3,431,260 - -0.3
3,431,260 - +0.0
3,431,260 - +0.1
3,431,349 + -0.1
3,431,674 + ABZR86_RS15230 0.25 -0.4
3,431,674 + ABZR86_RS15230 0.25 -0.2
3,431,674 + ABZR86_RS15230 0.25 +0.1
3,431,674 + ABZR86_RS15230 0.25 -0.6
3,431,675 - ABZR86_RS15230 0.25 -1.4
3,431,675 - ABZR86_RS15230 0.25 +0.2
3,431,675 - ABZR86_RS15230 0.25 -0.8
3,431,701 + ABZR86_RS15230 0.27 -0.1
3,431,701 + ABZR86_RS15230 0.27 +0.3
3,431,702 - ABZR86_RS15230 0.27 +0.2
3,431,702 - ABZR86_RS15230 0.27 -0.1
3,431,798 - ABZR86_RS15230 0.36 -0.1
3,431,798 - ABZR86_RS15230 0.36 -0.5
3,431,839 + ABZR86_RS15230 0.40 -0.1
3,431,839 + ABZR86_RS15230 0.40 -0.4
3,431,839 + ABZR86_RS15230 0.40 -0.2
3,431,839 + ABZR86_RS15230 0.40 +0.4
3,432,208 + ABZR86_RS15230 0.73 -0.3
3,432,209 - ABZR86_RS15230 0.73 -0.3
3,432,331 + ABZR86_RS15230 0.84 -0.0
3,432,331 + ABZR86_RS15230 0.84 +0.3
3,432,332 - ABZR86_RS15230 0.84 +0.1

Or see this region's nucleotide sequence