Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06230

Experiment: Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06220 and ABZR86_RS06225 are separated by 60 nucleotidesABZR86_RS06225 and ABZR86_RS06230 are separated by 154 nucleotidesABZR86_RS06230 and ABZR86_RS06235 are separated by 25 nucleotidesABZR86_RS06235 and ABZR86_RS06240 are separated by 4 nucleotidesABZR86_RS06240 and ABZR86_RS06245 are separated by 27 nucleotides ABZR86_RS06220: ABZR86_RS06220 - DUF3488 and transglutaminase-like domain-containing protein, at 1,392,263 to 1,394,242 _RS06220 ABZR86_RS06225: ABZR86_RS06225 - Slp family lipoprotein, at 1,394,303 to 1,394,884 _RS06225 ABZR86_RS06230: ABZR86_RS06230 - histidine triad nucleotide-binding protein, at 1,395,039 to 1,395,383 _RS06230 ABZR86_RS06235: ABZR86_RS06235 - recombination mediator RecR, at 1,395,409 to 1,396,002 _RS06235 ABZR86_RS06240: ABZR86_RS06240 - YbaB/EbfC family nucleoid-associated protein, at 1,396,007 to 1,396,330 _RS06240 ABZR86_RS06245: ABZR86_RS06245 - DNA polymerase III subunit gamma/tau, at 1,396,358 to 1,398,049 _RS06245 Position (kb) 1395 1396Strain fitness (log2 ratio) -2 -1 0 1at 1394.075 kb on + strandat 1394.075 kb on + strandat 1394.076 kb on - strandat 1394.076 kb on - strandat 1394.076 kb on - strandat 1394.076 kb on - strandat 1394.076 kb on - strandat 1394.141 kb on + strandat 1394.141 kb on + strandat 1394.141 kb on + strandat 1394.142 kb on - strandat 1394.142 kb on - strandat 1394.142 kb on - strandat 1394.142 kb on - strandat 1394.156 kb on + strandat 1394.157 kb on - strandat 1394.267 kb on + strandat 1394.390 kb on + strand, within ABZR86_RS06225at 1394.390 kb on + strand, within ABZR86_RS06225at 1394.390 kb on + strand, within ABZR86_RS06225at 1394.390 kb on + strand, within ABZR86_RS06225at 1394.390 kb on + strand, within ABZR86_RS06225at 1394.390 kb on + strand, within ABZR86_RS06225at 1394.390 kb on + strand, within ABZR86_RS06225at 1394.390 kb on + strand, within ABZR86_RS06225at 1394.390 kb on + strand, within ABZR86_RS06225at 1394.390 kb on + strand, within ABZR86_RS06225at 1394.390 kb on + strand, within ABZR86_RS06225at 1394.390 kb on + strand, within ABZR86_RS06225at 1394.391 kb on - strand, within ABZR86_RS06225at 1394.391 kb on - strand, within ABZR86_RS06225at 1394.391 kb on - strand, within ABZR86_RS06225at 1394.391 kb on - strand, within ABZR86_RS06225at 1394.391 kb on - strand, within ABZR86_RS06225at 1394.391 kb on - strand, within ABZR86_RS06225at 1394.391 kb on - strand, within ABZR86_RS06225at 1394.393 kb on - strand, within ABZR86_RS06225at 1394.597 kb on + strand, within ABZR86_RS06225at 1394.597 kb on + strand, within ABZR86_RS06225at 1394.597 kb on + strand, within ABZR86_RS06225at 1394.597 kb on + strand, within ABZR86_RS06225at 1394.597 kb on + strand, within ABZR86_RS06225at 1394.598 kb on - strand, within ABZR86_RS06225at 1394.598 kb on - strand, within ABZR86_RS06225at 1394.598 kb on - strand, within ABZR86_RS06225at 1394.687 kb on + strand, within ABZR86_RS06225at 1394.687 kb on + strand, within ABZR86_RS06225at 1394.687 kb on + strand, within ABZR86_RS06225at 1394.687 kb on + strand, within ABZR86_RS06225at 1394.688 kb on - strand, within ABZR86_RS06225at 1394.688 kb on - strand, within ABZR86_RS06225at 1394.688 kb on - strand, within ABZR86_RS06225at 1394.688 kb on - strand, within ABZR86_RS06225at 1394.688 kb on - strand, within ABZR86_RS06225at 1394.688 kb on - strand, within ABZR86_RS06225at 1394.694 kb on - strand, within ABZR86_RS06225at 1394.720 kb on + strand, within ABZR86_RS06225at 1394.720 kb on + strand, within ABZR86_RS06225at 1394.720 kb on + strand, within ABZR86_RS06225at 1394.720 kb on + strand, within ABZR86_RS06225at 1394.720 kb on + strand, within ABZR86_RS06225at 1394.721 kb on - strand, within ABZR86_RS06225at 1394.763 kb on - strand, within ABZR86_RS06225at 1394.763 kb on - strand, within ABZR86_RS06225at 1394.763 kb on - strand, within ABZR86_RS06225at 1394.765 kb on + strand, within ABZR86_RS06225at 1394.765 kb on + strand, within ABZR86_RS06225at 1394.765 kb on + strand, within ABZR86_RS06225at 1394.765 kb on + strand, within ABZR86_RS06225at 1394.765 kb on + strand, within ABZR86_RS06225at 1394.765 kb on + strand, within ABZR86_RS06225at 1394.765 kb on + strand, within ABZR86_RS06225at 1394.765 kb on + strand, within ABZR86_RS06225at 1394.765 kb on + strand, within ABZR86_RS06225at 1394.765 kb on + strand, within ABZR86_RS06225at 1394.765 kb on + strand, within ABZR86_RS06225at 1394.765 kb on + strand, within ABZR86_RS06225at 1394.766 kb on - strand, within ABZR86_RS06225at 1394.766 kb on - strand, within ABZR86_RS06225at 1394.766 kb on - strand, within ABZR86_RS06225at 1394.766 kb on - strand, within ABZR86_RS06225at 1394.766 kb on - strand, within ABZR86_RS06225at 1394.766 kb on - strand, within ABZR86_RS06225at 1394.766 kb on - strand, within ABZR86_RS06225at 1394.766 kb on - strand, within ABZR86_RS06225at 1394.766 kb on - strand, within ABZR86_RS06225at 1394.766 kb on - strand, within ABZR86_RS06225at 1394.799 kb on - strand, within ABZR86_RS06225at 1394.878 kb on + strandat 1394.878 kb on + strandat 1394.878 kb on + strandat 1394.878 kb on + strandat 1394.878 kb on + strandat 1394.878 kb on + strandat 1394.878 kb on + strandat 1394.878 kb on + strandat 1394.879 kb on - strandat 1394.879 kb on - strandat 1394.879 kb on - strandat 1394.879 kb on - strandat 1394.879 kb on - strandat 1394.879 kb on - strandat 1394.882 kb on + strandat 1394.882 kb on + strandat 1394.882 kb on + strandat 1394.883 kb on - strandat 1394.883 kb on - strandat 1394.883 kb on - strandat 1394.883 kb on - strandat 1394.883 kb on - strandat 1394.942 kb on + strandat 1394.943 kb on - strandat 1394.943 kb on - strandat 1394.943 kb on - strandat 1394.943 kb on - strandat 1394.943 kb on - strandat 1395.023 kb on + strandat 1395.023 kb on + strandat 1395.024 kb on - strandat 1395.024 kb on - strandat 1395.139 kb on + strand, within ABZR86_RS06230at 1395.172 kb on + strand, within ABZR86_RS06230at 1395.172 kb on + strand, within ABZR86_RS06230at 1395.172 kb on + strand, within ABZR86_RS06230at 1395.172 kb on + strand, within ABZR86_RS06230at 1395.172 kb on + strand, within ABZR86_RS06230at 1395.173 kb on - strand, within ABZR86_RS06230at 1395.173 kb on - strand, within ABZR86_RS06230at 1395.198 kb on - strand, within ABZR86_RS06230at 1395.198 kb on - strand, within ABZR86_RS06230at 1395.325 kb on + strand, within ABZR86_RS06230at 1395.326 kb on - strand, within ABZR86_RS06230at 1395.326 kb on - strand, within ABZR86_RS06230at 1395.326 kb on - strand, within ABZR86_RS06230at 1395.403 kb on + strandat 1395.403 kb on + strandat 1395.403 kb on + strandat 1395.404 kb on - strandat 1395.404 kb on - strandat 1395.404 kb on - strandat 1395.404 kb on - strandat 1395.404 kb on - strandat 1395.464 kb on + strandat 1395.464 kb on + strandat 1395.464 kb on + strandat 1395.465 kb on - strandat 1395.465 kb on - strandat 1395.465 kb on - strandat 1395.465 kb on - strandat 1395.465 kb on - strandat 1395.465 kb on - strandat 1395.545 kb on + strand, within ABZR86_RS06235at 1395.545 kb on + strand, within ABZR86_RS06235at 1395.546 kb on - strand, within ABZR86_RS06235at 1395.546 kb on - strand, within ABZR86_RS06235at 1395.698 kb on + strand, within ABZR86_RS06235at 1395.698 kb on + strand, within ABZR86_RS06235at 1395.699 kb on - strand, within ABZR86_RS06235at 1395.699 kb on - strand, within ABZR86_RS06235at 1396.008 kb on + strandat 1396.008 kb on + strandat 1396.008 kb on + strandat 1396.008 kb on + strandat 1396.337 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol%
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1,394,075 + +0.5
1,394,075 + +0.6
1,394,076 - +0.7
1,394,076 - +0.5
1,394,076 - +0.4
1,394,076 - -0.3
1,394,076 - -1.0
1,394,141 + -0.6
1,394,141 + +0.1
1,394,141 + +0.7
1,394,142 - -0.7
1,394,142 - +0.2
1,394,142 - +0.3
1,394,142 - -2.2
1,394,156 + +0.2
1,394,157 - +0.5
1,394,267 + -0.2
1,394,390 + ABZR86_RS06225 0.15 +0.9
1,394,390 + ABZR86_RS06225 0.15 +0.3
1,394,390 + ABZR86_RS06225 0.15 +0.5
1,394,390 + ABZR86_RS06225 0.15 -0.6
1,394,390 + ABZR86_RS06225 0.15 -1.2
1,394,390 + ABZR86_RS06225 0.15 +0.5
1,394,390 + ABZR86_RS06225 0.15 +0.3
1,394,390 + ABZR86_RS06225 0.15 +0.2
1,394,390 + ABZR86_RS06225 0.15 +0.4
1,394,390 + ABZR86_RS06225 0.15 -0.3
1,394,390 + ABZR86_RS06225 0.15 -0.0
1,394,390 + ABZR86_RS06225 0.15 -0.3
1,394,391 - ABZR86_RS06225 0.15 -0.7
1,394,391 - ABZR86_RS06225 0.15 +0.2
1,394,391 - ABZR86_RS06225 0.15 -0.5
1,394,391 - ABZR86_RS06225 0.15 -0.3
1,394,391 - ABZR86_RS06225 0.15 -0.3
1,394,391 - ABZR86_RS06225 0.15 +0.2
1,394,391 - ABZR86_RS06225 0.15 +0.2
1,394,393 - ABZR86_RS06225 0.15 -0.2
1,394,597 + ABZR86_RS06225 0.51 -0.2
1,394,597 + ABZR86_RS06225 0.51 -0.1
1,394,597 + ABZR86_RS06225 0.51 -0.4
1,394,597 + ABZR86_RS06225 0.51 +1.0
1,394,597 + ABZR86_RS06225 0.51 +0.1
1,394,598 - ABZR86_RS06225 0.51 +0.0
1,394,598 - ABZR86_RS06225 0.51 -0.4
1,394,598 - ABZR86_RS06225 0.51 +0.3
1,394,687 + ABZR86_RS06225 0.66 -0.2
1,394,687 + ABZR86_RS06225 0.66 +0.4
1,394,687 + ABZR86_RS06225 0.66 +0.5
1,394,687 + ABZR86_RS06225 0.66 +0.5
1,394,688 - ABZR86_RS06225 0.66 +0.1
1,394,688 - ABZR86_RS06225 0.66 +0.4
1,394,688 - ABZR86_RS06225 0.66 +0.9
1,394,688 - ABZR86_RS06225 0.66 +0.4
1,394,688 - ABZR86_RS06225 0.66 +0.7
1,394,688 - ABZR86_RS06225 0.66 +0.1
1,394,694 - ABZR86_RS06225 0.67 +0.1
1,394,720 + ABZR86_RS06225 0.72 -0.5
1,394,720 + ABZR86_RS06225 0.72 +0.5
1,394,720 + ABZR86_RS06225 0.72 +0.2
1,394,720 + ABZR86_RS06225 0.72 -0.2
1,394,720 + ABZR86_RS06225 0.72 +0.9
1,394,721 - ABZR86_RS06225 0.72 -0.0
1,394,763 - ABZR86_RS06225 0.79 -0.2
1,394,763 - ABZR86_RS06225 0.79 +0.2
1,394,763 - ABZR86_RS06225 0.79 +0.1
1,394,765 + ABZR86_RS06225 0.79 +0.2
1,394,765 + ABZR86_RS06225 0.79 +0.1
1,394,765 + ABZR86_RS06225 0.79 +0.3
1,394,765 + ABZR86_RS06225 0.79 -0.1
1,394,765 + ABZR86_RS06225 0.79 -1.2
1,394,765 + ABZR86_RS06225 0.79 -0.2
1,394,765 + ABZR86_RS06225 0.79 +0.0
1,394,765 + ABZR86_RS06225 0.79 -0.7
1,394,765 + ABZR86_RS06225 0.79 +0.3
1,394,765 + ABZR86_RS06225 0.79 +0.0
1,394,765 + ABZR86_RS06225 0.79 +0.2
1,394,765 + ABZR86_RS06225 0.79 +0.1
1,394,766 - ABZR86_RS06225 0.80 +0.0
1,394,766 - ABZR86_RS06225 0.80 +0.4
1,394,766 - ABZR86_RS06225 0.80 +0.0
1,394,766 - ABZR86_RS06225 0.80 +0.9
1,394,766 - ABZR86_RS06225 0.80 -0.3
1,394,766 - ABZR86_RS06225 0.80 +0.2
1,394,766 - ABZR86_RS06225 0.80 +0.2
1,394,766 - ABZR86_RS06225 0.80 +0.4
1,394,766 - ABZR86_RS06225 0.80 -0.6
1,394,766 - ABZR86_RS06225 0.80 +0.4
1,394,799 - ABZR86_RS06225 0.85 +0.0
1,394,878 + +0.3
1,394,878 + +0.1
1,394,878 + +0.0
1,394,878 + +1.6
1,394,878 + +0.0
1,394,878 + -0.1
1,394,878 + +0.8
1,394,878 + +0.2
1,394,879 - +0.4
1,394,879 - +0.2
1,394,879 - -0.3
1,394,879 - +1.6
1,394,879 - +0.0
1,394,879 - +1.5
1,394,882 + +0.3
1,394,882 + -0.2
1,394,882 + -0.2
1,394,883 - -0.1
1,394,883 - +0.2
1,394,883 - +0.1
1,394,883 - -1.9
1,394,883 - -0.3
1,394,942 + -0.7
1,394,943 - -0.7
1,394,943 - +0.5
1,394,943 - +0.4
1,394,943 - -0.5
1,394,943 - -0.1
1,395,023 + -0.7
1,395,023 + -0.3
1,395,024 - -0.1
1,395,024 - +0.5
1,395,139 + ABZR86_RS06230 0.29 -0.4
1,395,172 + ABZR86_RS06230 0.39 -0.6
1,395,172 + ABZR86_RS06230 0.39 +0.0
1,395,172 + ABZR86_RS06230 0.39 -1.8
1,395,172 + ABZR86_RS06230 0.39 +0.1
1,395,172 + ABZR86_RS06230 0.39 -0.2
1,395,173 - ABZR86_RS06230 0.39 -0.3
1,395,173 - ABZR86_RS06230 0.39 -0.0
1,395,198 - ABZR86_RS06230 0.46 +0.4
1,395,198 - ABZR86_RS06230 0.46 +0.3
1,395,325 + ABZR86_RS06230 0.83 +0.1
1,395,326 - ABZR86_RS06230 0.83 -0.4
1,395,326 - ABZR86_RS06230 0.83 +0.3
1,395,326 - ABZR86_RS06230 0.83 -1.6
1,395,403 + +0.2
1,395,403 + -0.1
1,395,403 + -0.4
1,395,404 - -1.6
1,395,404 - -0.4
1,395,404 - -0.0
1,395,404 - -0.3
1,395,404 - -1.0
1,395,464 + -0.7
1,395,464 + -0.3
1,395,464 + +0.7
1,395,465 - -0.4
1,395,465 - +0.4
1,395,465 - -0.7
1,395,465 - -0.4
1,395,465 - -0.4
1,395,465 - +0.3
1,395,545 + ABZR86_RS06235 0.23 -0.6
1,395,545 + ABZR86_RS06235 0.23 -0.1
1,395,546 - ABZR86_RS06235 0.23 -1.0
1,395,546 - ABZR86_RS06235 0.23 -0.0
1,395,698 + ABZR86_RS06235 0.49 -0.4
1,395,698 + ABZR86_RS06235 0.49 +0.1
1,395,699 - ABZR86_RS06235 0.49 +0.2
1,395,699 - ABZR86_RS06235 0.49 +1.0
1,396,008 + -0.4
1,396,008 + +1.0
1,396,008 + +1.6
1,396,008 + +0.3
1,396,337 + -0.0

Or see this region's nucleotide sequence