Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3158 and DvMF_3159 are separated by 221 nucleotides DvMF_3159 and DvMF_3160 are separated by 339 nucleotides DvMF_3160 and DvMF_3161 are separated by 4 nucleotides
DvMF_3158: DvMF_3158 - carboxyl-terminal protease (RefSeq), at 3,982,747 to 3,984,048
_3158
DvMF_3159: DvMF_3159 - protein of unknown function DUF610 YibQ (RefSeq), at 3,984,270 to 3,985,901
_3159
DvMF_3160: DvMF_3160 - Nucleoside-diphosphate kinase (RefSeq), at 3,986,241 to 3,986,660
_3160
DvMF_3161: DvMF_3161 - pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) , at 3,986,665 to 3,987,474
_3161
Position (kb)
3984
3985
3986 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3984.197 kb on + strand at 3984.375 kb on - strand at 3984.542 kb on + strand, within DvMF_3159 at 3984.894 kb on + strand, within DvMF_3159 at 3985.464 kb on - strand, within DvMF_3159 at 3985.492 kb on - strand, within DvMF_3159 at 3985.831 kb on + strand at 3985.969 kb on + strand at 3985.971 kb on + strand at 3986.149 kb on + strand at 3986.170 kb on - strand at 3986.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 3,984,197 + -0.0 3,984,375 - -0.9 3,984,542 + DvMF_3159 0.17 -0.9 3,984,894 + DvMF_3159 0.38 -0.5 3,985,464 - DvMF_3159 0.73 -3.1 3,985,492 - DvMF_3159 0.75 -0.7 3,985,831 + -1.0 3,985,969 + -0.1 3,985,971 + -0.6 3,986,149 + -1.0 3,986,170 - -0.3 3,986,175 - +0.2
Or see this region's nucleotide sequence