Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2821

Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2820 and DvMF_2821 are separated by 85 nucleotidesDvMF_2821 and DvMF_2822 are separated by 165 nucleotidesDvMF_2822 and DvMF_2823 overlap by 17 nucleotides DvMF_2820: DvMF_2820 - rod shape-determining protein MreB (RefSeq), at 3,565,508 to 3,566,548 _2820 DvMF_2821: DvMF_2821 - rod shape-determining protein MreC (RefSeq), at 3,566,634 to 3,567,593 _2821 DvMF_2822: DvMF_2822 - hypothetical protein (RefSeq), at 3,567,759 to 3,568,229 _2822 DvMF_2823: DvMF_2823 - penicillin-binding protein 2 (RefSeq), at 3,568,213 to 3,570,480 _2823 Position (kb) 3566 3567 3568Strain fitness (log2 ratio) -3 -2 -1 0 1at 3566.543 kb on + strandat 3567.490 kb on - strand, within DvMF_2821at 3567.597 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 %
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3,566,543 + -0.3
3,567,490 - DvMF_2821 0.89 -3.4
3,567,597 + +0.1

Or see this region's nucleotide sequence