Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2248 and DvMF_2249 are separated by 402 nucleotides DvMF_2249 and DvMF_2250 are separated by 384 nucleotides
DvMF_2248: DvMF_2248 - signal recognition particle-docking protein FtsY (RefSeq), at 2,822,247 to 2,823,641
_2248
DvMF_2249: DvMF_2249 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 2,824,044 to 2,826,359
_2249
DvMF_2250: DvMF_2250 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 2,826,744 to 2,827,967
_2250
Position (kb)
2824
2825
2826
2827 Strain fitness (log2 ratio)
-2
-1
0
1 at 2824.047 kb on + strand at 2824.288 kb on + strand, within DvMF_2249 at 2824.361 kb on - strand, within DvMF_2249 at 2824.365 kb on + strand, within DvMF_2249 at 2824.366 kb on - strand, within DvMF_2249 at 2824.462 kb on - strand, within DvMF_2249 at 2824.985 kb on + strand, within DvMF_2249 at 2825.269 kb on + strand, within DvMF_2249 at 2825.428 kb on - strand, within DvMF_2249 at 2825.545 kb on - strand, within DvMF_2249 at 2825.680 kb on - strand, within DvMF_2249 at 2826.225 kb on + strand at 2826.362 kb on - strand at 2826.490 kb on + strand at 2826.516 kb on + strand at 2826.528 kb on + strand at 2826.604 kb on + strand at 2826.839 kb on + strand at 2827.047 kb on - strand, within DvMF_2250 at 2827.047 kb on - strand, within DvMF_2250 at 2827.072 kb on - strand, within DvMF_2250 at 2827.174 kb on + strand, within DvMF_2250
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 2,824,047 + -0.9 2,824,288 + DvMF_2249 0.11 -0.9 2,824,361 - DvMF_2249 0.14 -1.0 2,824,365 + DvMF_2249 0.14 -1.6 2,824,366 - DvMF_2249 0.14 -1.0 2,824,462 - DvMF_2249 0.18 -1.3 2,824,985 + DvMF_2249 0.41 -1.1 2,825,269 + DvMF_2249 0.53 -0.3 2,825,428 - DvMF_2249 0.60 -1.9 2,825,545 - DvMF_2249 0.65 -0.7 2,825,680 - DvMF_2249 0.71 -0.7 2,826,225 + +0.1 2,826,362 - -0.5 2,826,490 + -0.1 2,826,516 + -0.1 2,826,528 + -0.2 2,826,604 + -0.1 2,826,839 + -0.3 2,827,047 - DvMF_2250 0.25 -0.3 2,827,047 - DvMF_2250 0.25 -0.4 2,827,072 - DvMF_2250 0.27 -0.2 2,827,174 + DvMF_2250 0.35 -0.4
Or see this region's nucleotide sequence