Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1768 and DvMF_1769 are separated by 2 nucleotides DvMF_1769 and DvMF_1770 are separated by 72 nucleotides DvMF_1770 and DvMF_1771 are separated by 125 nucleotides
DvMF_1768: DvMF_1768 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,164,469 to 2,166,199
_1768
DvMF_1769: DvMF_1769 - response regulator receiver protein (RefSeq), at 2,166,202 to 2,166,591
_1769
DvMF_1770: DvMF_1770 - hypothetical protein (RefSeq), at 2,166,664 to 2,167,398
_1770
DvMF_1771: DvMF_1771 - hypothetical protein (RefSeq), at 2,167,524 to 2,167,814
_1771
Position (kb)
2166
2167 Strain fitness (log2 ratio)
-1
0
1 at 2165.211 kb on + strand, within DvMF_1768 at 2165.234 kb on - strand, within DvMF_1768 at 2165.498 kb on - strand, within DvMF_1768 at 2165.664 kb on - strand, within DvMF_1768 at 2165.742 kb on - strand, within DvMF_1768 at 2166.026 kb on - strand, within DvMF_1768 at 2166.341 kb on + strand, within DvMF_1769 at 2166.815 kb on - strand, within DvMF_1770 at 2166.817 kb on + strand, within DvMF_1770 at 2166.845 kb on - strand, within DvMF_1770 at 2166.845 kb on - strand, within DvMF_1770 at 2167.061 kb on + strand, within DvMF_1770 at 2167.063 kb on - strand, within DvMF_1770
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 2,165,211 + DvMF_1768 0.43 +0.1 2,165,234 - DvMF_1768 0.44 -0.9 2,165,498 - DvMF_1768 0.59 +0.0 2,165,664 - DvMF_1768 0.69 +1.3 2,165,742 - DvMF_1768 0.74 -0.2 2,166,026 - DvMF_1768 0.90 +0.5 2,166,341 + DvMF_1769 0.36 -1.4 2,166,815 - DvMF_1770 0.21 -0.6 2,166,817 + DvMF_1770 0.21 +0.0 2,166,845 - DvMF_1770 0.25 -0.3 2,166,845 - DvMF_1770 0.25 -0.1 2,167,061 + DvMF_1770 0.54 -0.2 2,167,063 - DvMF_1770 0.54 -0.3
Or see this region's nucleotide sequence