Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1612 and DvMF_1613 are separated by 616 nucleotides DvMF_1613 and DvMF_1614 are separated by 227 nucleotides
DvMF_1612: DvMF_1612 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family (RefSeq), at 1,984,422 to 1,986,884
_1612
DvMF_1613: DvMF_1613 - formylmethanofuran dehydrogenase subunit E region (RefSeq), at 1,987,501 to 1,989,144
_1613
DvMF_1614: DvMF_1614 - transcriptional regulator, AraC family (RefSeq), at 1,989,372 to 1,990,472
_1614
Position (kb)
1987
1988
1989
1990 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1986.799 kb on + strand at 1986.853 kb on + strand at 1986.861 kb on - strand at 1987.097 kb on - strand at 1987.600 kb on + strand at 1987.652 kb on + strand at 1987.890 kb on + strand, within DvMF_1613 at 1987.926 kb on + strand, within DvMF_1613 at 1988.065 kb on - strand, within DvMF_1613 at 1988.195 kb on - strand, within DvMF_1613 at 1988.260 kb on - strand, within DvMF_1613 at 1988.301 kb on + strand, within DvMF_1613 at 1988.478 kb on + strand, within DvMF_1613 at 1988.763 kb on - strand, within DvMF_1613 at 1988.816 kb on + strand, within DvMF_1613 at 1988.857 kb on + strand, within DvMF_1613 at 1988.907 kb on + strand, within DvMF_1613 at 1988.965 kb on - strand, within DvMF_1613 at 1988.992 kb on - strand at 1989.088 kb on + strand at 1989.415 kb on + strand at 1989.578 kb on - strand, within DvMF_1614 at 1989.745 kb on + strand, within DvMF_1614 at 1989.881 kb on + strand, within DvMF_1614 at 1989.893 kb on + strand, within DvMF_1614 at 1989.912 kb on + strand, within DvMF_1614 at 1989.920 kb on - strand, within DvMF_1614
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 1,986,799 + -0.2 1,986,853 + -0.3 1,986,861 - -0.0 1,987,097 - -0.4 1,987,600 + -2.1 1,987,652 + -2.2 1,987,890 + DvMF_1613 0.24 -2.3 1,987,926 + DvMF_1613 0.26 -1.8 1,988,065 - DvMF_1613 0.34 -3.5 1,988,195 - DvMF_1613 0.42 -2.3 1,988,260 - DvMF_1613 0.46 -2.2 1,988,301 + DvMF_1613 0.49 -2.1 1,988,478 + DvMF_1613 0.59 -2.9 1,988,763 - DvMF_1613 0.77 -1.6 1,988,816 + DvMF_1613 0.80 -3.6 1,988,857 + DvMF_1613 0.82 -3.1 1,988,907 + DvMF_1613 0.86 -2.4 1,988,965 - DvMF_1613 0.89 -2.0 1,988,992 - -3.4 1,989,088 + -2.3 1,989,415 + +0.3 1,989,578 - DvMF_1614 0.19 -0.5 1,989,745 + DvMF_1614 0.34 +0.0 1,989,881 + DvMF_1614 0.46 -0.1 1,989,893 + DvMF_1614 0.47 -0.2 1,989,912 + DvMF_1614 0.49 -0.1 1,989,920 - DvMF_1614 0.50 -0.3
Or see this region's nucleotide sequence