Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1613

Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1612 and DvMF_1613 are separated by 616 nucleotidesDvMF_1613 and DvMF_1614 are separated by 227 nucleotides DvMF_1612: DvMF_1612 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family (RefSeq), at 1,984,422 to 1,986,884 _1612 DvMF_1613: DvMF_1613 - formylmethanofuran dehydrogenase subunit E region (RefSeq), at 1,987,501 to 1,989,144 _1613 DvMF_1614: DvMF_1614 - transcriptional regulator, AraC family (RefSeq), at 1,989,372 to 1,990,472 _1614 Position (kb) 1987 1988 1989 1990Strain fitness (log2 ratio) -3 -2 -1 0 1at 1986.799 kb on + strandat 1986.853 kb on + strandat 1986.861 kb on - strandat 1987.097 kb on - strandat 1987.600 kb on + strandat 1987.652 kb on + strandat 1987.890 kb on + strand, within DvMF_1613at 1987.926 kb on + strand, within DvMF_1613at 1988.065 kb on - strand, within DvMF_1613at 1988.195 kb on - strand, within DvMF_1613at 1988.260 kb on - strand, within DvMF_1613at 1988.301 kb on + strand, within DvMF_1613at 1988.478 kb on + strand, within DvMF_1613at 1988.763 kb on - strand, within DvMF_1613at 1988.816 kb on + strand, within DvMF_1613at 1988.857 kb on + strand, within DvMF_1613at 1988.907 kb on + strand, within DvMF_1613at 1988.965 kb on - strand, within DvMF_1613at 1988.992 kb on - strandat 1989.088 kb on + strandat 1989.415 kb on + strandat 1989.578 kb on - strand, within DvMF_1614at 1989.745 kb on + strand, within DvMF_1614at 1989.881 kb on + strand, within DvMF_1614at 1989.893 kb on + strand, within DvMF_1614at 1989.912 kb on + strand, within DvMF_1614at 1989.920 kb on - strand, within DvMF_1614

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 %
remove
1,986,799 + -0.2
1,986,853 + -0.3
1,986,861 - -0.0
1,987,097 - -0.4
1,987,600 + -2.1
1,987,652 + -2.2
1,987,890 + DvMF_1613 0.24 -2.3
1,987,926 + DvMF_1613 0.26 -1.8
1,988,065 - DvMF_1613 0.34 -3.5
1,988,195 - DvMF_1613 0.42 -2.3
1,988,260 - DvMF_1613 0.46 -2.2
1,988,301 + DvMF_1613 0.49 -2.1
1,988,478 + DvMF_1613 0.59 -2.9
1,988,763 - DvMF_1613 0.77 -1.6
1,988,816 + DvMF_1613 0.80 -3.6
1,988,857 + DvMF_1613 0.82 -3.1
1,988,907 + DvMF_1613 0.86 -2.4
1,988,965 - DvMF_1613 0.89 -2.0
1,988,992 - -3.4
1,989,088 + -2.3
1,989,415 + +0.3
1,989,578 - DvMF_1614 0.19 -0.5
1,989,745 + DvMF_1614 0.34 +0.0
1,989,881 + DvMF_1614 0.46 -0.1
1,989,893 + DvMF_1614 0.47 -0.2
1,989,912 + DvMF_1614 0.49 -0.1
1,989,920 - DvMF_1614 0.50 -0.3

Or see this region's nucleotide sequence