Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1552

Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1551 and DvMF_1552 are separated by 130 nucleotidesDvMF_1552 and DvMF_1553 are separated by 531 nucleotides DvMF_1551: DvMF_1551 - hypothetical protein (RefSeq), at 1,915,395 to 1,916,093 _1551 DvMF_1552: DvMF_1552 - hypothetical protein (RefSeq), at 1,916,224 to 1,916,481 _1552 DvMF_1553: DvMF_1553 - sulfite reductase, dissimilatory-type alpha subunit (RefSeq), at 1,917,013 to 1,918,326 _1553 Position (kb) 1916 1917Strain fitness (log2 ratio) -3 -2 -1 0 1at 1915.326 kb on + strandat 1915.534 kb on + strand, within DvMF_1551at 1915.593 kb on - strand, within DvMF_1551at 1915.642 kb on + strand, within DvMF_1551at 1915.696 kb on + strand, within DvMF_1551at 1915.742 kb on + strand, within DvMF_1551at 1915.751 kb on - strand, within DvMF_1551at 1916.033 kb on + strandat 1916.072 kb on + strandat 1916.239 kb on - strandat 1916.268 kb on + strand, within DvMF_1552at 1916.268 kb on + strand, within DvMF_1552at 1916.471 kb on - strandat 1916.554 kb on - strandat 1916.664 kb on + strandat 1916.672 kb on - strandat 1916.923 kb on + strandat 1916.964 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 %
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1,915,326 + -0.4
1,915,534 + DvMF_1551 0.20 -0.3
1,915,593 - DvMF_1551 0.28 -0.4
1,915,642 + DvMF_1551 0.35 -0.2
1,915,696 + DvMF_1551 0.43 -0.2
1,915,742 + DvMF_1551 0.50 -0.6
1,915,751 - DvMF_1551 0.51 +0.6
1,916,033 + -0.4
1,916,072 + -0.9
1,916,239 - -0.2
1,916,268 + DvMF_1552 0.17 -0.7
1,916,268 + DvMF_1552 0.17 -3.1
1,916,471 - -0.9
1,916,554 - -0.2
1,916,664 + -0.1
1,916,672 - -0.0
1,916,923 + -0.2
1,916,964 + -0.1

Or see this region's nucleotide sequence