Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1493 and DvMF_1494 are separated by 736 nucleotides DvMF_1494 and DvMF_1495 are separated by 618 nucleotides
DvMF_1493: DvMF_1493 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,833,593 to 1,835,533
_1493
DvMF_1494: DvMF_1494 - type I secretion outer membrane protein, TolC family (RefSeq), at 1,836,270 to 1,837,622
_1494
DvMF_1495: DvMF_1495 - von Willebrand factor type A (RefSeq), at 1,838,241 to 1,845,677
_1495
Position (kb)
1836
1837
1838 Strain fitness (log2 ratio)
-2
-1
0
1 at 1835.333 kb on + strand, within DvMF_1493 at 1835.352 kb on - strand at 1836.257 kb on + strand at 1836.327 kb on + strand at 1836.416 kb on + strand, within DvMF_1494 at 1836.490 kb on + strand, within DvMF_1494 at 1836.498 kb on - strand, within DvMF_1494 at 1836.498 kb on - strand, within DvMF_1494 at 1836.498 kb on - strand, within DvMF_1494 at 1836.532 kb on - strand, within DvMF_1494 at 1836.700 kb on + strand, within DvMF_1494 at 1836.728 kb on + strand, within DvMF_1494 at 1836.986 kb on + strand, within DvMF_1494 at 1836.996 kb on + strand, within DvMF_1494 at 1837.211 kb on - strand, within DvMF_1494 at 1837.397 kb on - strand, within DvMF_1494 at 1837.732 kb on + strand at 1837.818 kb on + strand at 1837.902 kb on - strand at 1837.921 kb on + strand at 1837.929 kb on - strand at 1837.950 kb on + strand at 1838.074 kb on - strand at 1838.122 kb on + strand at 1838.207 kb on + strand at 1838.314 kb on - strand at 1838.349 kb on - strand at 1838.364 kb on - strand at 1838.414 kb on + strand at 1838.575 kb on - strand at 1838.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 1,835,333 + DvMF_1493 0.90 -0.0 1,835,352 - -0.6 1,836,257 + -0.2 1,836,327 + -1.0 1,836,416 + DvMF_1494 0.11 -0.8 1,836,490 + DvMF_1494 0.16 -1.3 1,836,498 - DvMF_1494 0.17 -0.9 1,836,498 - DvMF_1494 0.17 -1.0 1,836,498 - DvMF_1494 0.17 -1.3 1,836,532 - DvMF_1494 0.19 -1.4 1,836,700 + DvMF_1494 0.32 -0.6 1,836,728 + DvMF_1494 0.34 -1.9 1,836,986 + DvMF_1494 0.53 -0.9 1,836,996 + DvMF_1494 0.54 -1.0 1,837,211 - DvMF_1494 0.70 -0.8 1,837,397 - DvMF_1494 0.83 -1.4 1,837,732 + +0.4 1,837,818 + -0.3 1,837,902 - -0.5 1,837,921 + -0.1 1,837,929 - -0.2 1,837,950 + +0.2 1,838,074 - -0.3 1,838,122 + -0.3 1,838,207 + -1.1 1,838,314 - -0.3 1,838,349 - -0.0 1,838,364 - -0.1 1,838,414 + +0.2 1,838,575 - -0.0 1,838,599 - -0.0
Or see this region's nucleotide sequence