Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1404

Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1403 and DvMF_1404 are separated by 235 nucleotidesDvMF_1404 and DvMF_1405 are separated by 629 nucleotides DvMF_1403: DvMF_1403 - NLP/P60 protein (RefSeq), at 1,713,851 to 1,715,305 _1403 DvMF_1404: DvMF_1404 - helicase, RecD/TraA family (RefSeq), at 1,715,541 to 1,717,727 _1404 DvMF_1405: DvMF_1405 - hypothetical protein (RefSeq), at 1,718,357 to 1,718,824 _1405 Position (kb) 1715 1716 1717 1718Strain fitness (log2 ratio) -3 -2 -1 0 1at 1714.544 kb on + strand, within DvMF_1403at 1714.549 kb on + strand, within DvMF_1403at 1714.652 kb on + strand, within DvMF_1403at 1714.972 kb on - strand, within DvMF_1403at 1715.009 kb on + strand, within DvMF_1403at 1715.176 kb on + strandat 1715.176 kb on + strandat 1715.200 kb on + strandat 1715.344 kb on + strandat 1715.625 kb on - strandat 1715.625 kb on - strandat 1715.688 kb on - strandat 1715.814 kb on + strand, within DvMF_1404at 1716.509 kb on + strand, within DvMF_1404at 1716.522 kb on - strand, within DvMF_1404at 1716.748 kb on + strand, within DvMF_1404at 1716.929 kb on + strand, within DvMF_1404at 1716.980 kb on + strand, within DvMF_1404at 1717.564 kb on - strandat 1717.623 kb on - strandat 1717.653 kb on - strandat 1717.747 kb on + strandat 1717.748 kb on + strandat 1718.426 kb on - strand, within DvMF_1405at 1718.642 kb on + strand, within DvMF_1405at 1718.709 kb on - strand, within DvMF_1405

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 %
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1,714,544 + DvMF_1403 0.48 -0.9
1,714,549 + DvMF_1403 0.48 -1.5
1,714,652 + DvMF_1403 0.55 -1.1
1,714,972 - DvMF_1403 0.77 -1.9
1,715,009 + DvMF_1403 0.80 -0.7
1,715,176 + -1.3
1,715,176 + -2.3
1,715,200 + -1.0
1,715,344 + -0.9
1,715,625 - -1.5
1,715,625 - -2.6
1,715,688 - -1.7
1,715,814 + DvMF_1404 0.12 -1.4
1,716,509 + DvMF_1404 0.44 -2.6
1,716,522 - DvMF_1404 0.45 -1.7
1,716,748 + DvMF_1404 0.55 -1.3
1,716,929 + DvMF_1404 0.63 -1.5
1,716,980 + DvMF_1404 0.66 -3.2
1,717,564 - -1.3
1,717,623 - -0.9
1,717,653 - -1.1
1,717,747 + -0.1
1,717,748 + -0.1
1,718,426 - DvMF_1405 0.15 -0.9
1,718,642 + DvMF_1405 0.61 +0.1
1,718,709 - DvMF_1405 0.75 -0.5

Or see this region's nucleotide sequence