Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1377

Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1376 and DvMF_1377 are separated by 271 nucleotidesDvMF_1377 and obgE are separated by 47 nucleotides DvMF_1376: DvMF_1376 - phosphomethylpyrimidine kinase (RefSeq), at 1,685,336 to 1,686,184 _1376 DvMF_1377: DvMF_1377 - gamma-glutamyl kinase (RefSeq), at 1,686,456 to 1,687,643 _1377 DvMF_1378: obgE - GTPase ObgE (RefSeq), at 1,687,691 to 1,688,797 obgE Position (kb) 1686 1687 1688Strain fitness (log2 ratio) -3 -2 -1 0 1at 1686.198 kb on + strandat 1686.206 kb on - strandat 1686.390 kb on + strandat 1686.390 kb on + strandat 1686.448 kb on - strandat 1686.615 kb on - strand, within DvMF_1377at 1686.669 kb on + strand, within DvMF_1377at 1686.699 kb on + strand, within DvMF_1377at 1686.985 kb on - strand, within DvMF_1377at 1687.018 kb on + strand, within DvMF_1377at 1687.175 kb on + strand, within DvMF_1377at 1687.508 kb on - strand, within DvMF_1377at 1687.754 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 %
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1,686,198 + -0.9
1,686,206 - -0.0
1,686,390 + -0.7
1,686,390 + -0.7
1,686,448 - -0.4
1,686,615 - DvMF_1377 0.13 -2.7
1,686,669 + DvMF_1377 0.18 -1.3
1,686,699 + DvMF_1377 0.20 -2.5
1,686,985 - DvMF_1377 0.45 -1.8
1,687,018 + DvMF_1377 0.47 -1.7
1,687,175 + DvMF_1377 0.61 -3.3
1,687,508 - DvMF_1377 0.89 -3.2
1,687,754 - -0.1

Or see this region's nucleotide sequence