Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1348

Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1347 and DvMF_1348 are separated by 284 nucleotidesDvMF_1348 and DvMF_1349 are separated by 286 nucleotides DvMF_1347: DvMF_1347 - 7-cyano-7-deazaguanine reductase (RefSeq), at 1,644,245 to 1,644,811 _1347 DvMF_1348: DvMF_1348 - Organic solvent tolerance protein (RefSeq), at 1,645,096 to 1,647,441 _1348 DvMF_1349: DvMF_1349 - alanine racemase (RefSeq), at 1,647,728 to 1,648,846 _1349 Position (kb) 1645 1646 1647 1648Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1644.167 kb on + strandat 1644.436 kb on + strand, within DvMF_1347at 1644.615 kb on + strand, within DvMF_1347at 1644.880 kb on + strandat 1644.918 kb on - strandat 1644.971 kb on + strandat 1644.972 kb on - strandat 1644.979 kb on - strandat 1644.979 kb on - strandat 1648.199 kb on + strand, within DvMF_1349at 1648.321 kb on + strand, within DvMF_1349at 1648.394 kb on + strand, within DvMF_1349at 1648.425 kb on - strand, within DvMF_1349

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 %
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1,644,167 + +0.0
1,644,436 + DvMF_1347 0.34 -0.3
1,644,615 + DvMF_1347 0.65 -0.1
1,644,880 + +0.0
1,644,918 - -0.2
1,644,971 + -0.2
1,644,972 - -0.3
1,644,979 - -0.1
1,644,979 - -0.6
1,648,199 + DvMF_1349 0.42 -2.8
1,648,321 + DvMF_1349 0.53 -2.3
1,648,394 + DvMF_1349 0.60 -2.4
1,648,425 - DvMF_1349 0.62 -5.9

Or see this region's nucleotide sequence