Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1241

Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1240 and DvMF_1241 are separated by 203 nucleotidesDvMF_1241 and DvMF_1242 are separated by 312 nucleotides DvMF_1240: DvMF_1240 - Integral membrane protein TerC (RefSeq), at 1,529,261 to 1,530,277 _1240 DvMF_1241: DvMF_1241 - ferric uptake regulator, Fur family (RefSeq), at 1,530,481 to 1,530,993 _1241 DvMF_1242: DvMF_1242 - Catalase (RefSeq), at 1,531,306 to 1,532,748 _1242 Position (kb) 1530 1531Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1529.607 kb on + strand, within DvMF_1240at 1529.726 kb on - strand, within DvMF_1240at 1529.887 kb on + strand, within DvMF_1240at 1530.021 kb on + strand, within DvMF_1240at 1530.099 kb on - strand, within DvMF_1240at 1530.203 kb on + strandat 1530.353 kb on - strandat 1530.353 kb on - strandat 1530.402 kb on + strandat 1530.421 kb on + strandat 1530.429 kb on - strandat 1530.457 kb on + strandat 1530.492 kb on + strandat 1530.675 kb on + strand, within DvMF_1241at 1530.683 kb on - strand, within DvMF_1241at 1531.448 kb on + strandat 1531.627 kb on + strand, within DvMF_1242at 1531.629 kb on - strand, within DvMF_1242at 1531.655 kb on - strand, within DvMF_1242at 1531.734 kb on + strand, within DvMF_1242at 1531.765 kb on + strand, within DvMF_1242

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 %
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1,529,607 + DvMF_1240 0.34 -0.6
1,529,726 - DvMF_1240 0.46 +0.0
1,529,887 + DvMF_1240 0.62 -3.8
1,530,021 + DvMF_1240 0.75 -0.1
1,530,099 - DvMF_1240 0.82 -0.1
1,530,203 + -0.3
1,530,353 - -0.5
1,530,353 - -0.7
1,530,402 + -0.4
1,530,421 + -0.7
1,530,429 - -0.2
1,530,457 + -0.7
1,530,492 + -0.5
1,530,675 + DvMF_1241 0.38 -0.9
1,530,683 - DvMF_1241 0.39 -1.0
1,531,448 + -0.5
1,531,627 + DvMF_1242 0.22 -0.4
1,531,629 - DvMF_1242 0.22 -0.2
1,531,655 - DvMF_1242 0.24 -0.6
1,531,734 + DvMF_1242 0.30 -0.4
1,531,765 + DvMF_1242 0.32 -0.6

Or see this region's nucleotide sequence