Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1229 and DvMF_1230 are separated by 314 nucleotides DvMF_1230 and DvMF_1231 are separated by 125 nucleotides DvMF_1231 and DvMF_1232 overlap by 4 nucleotides
DvMF_1229: DvMF_1229 - carbon starvation protein CstA (RefSeq), at 1,516,587 to 1,518,005
_1229
DvMF_1230: DvMF_1230 - molybdenum cofactor biosynthesis protein A (RefSeq), at 1,518,320 to 1,519,405
_1230
DvMF_1231: DvMF_1231 - Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein (RefSeq), at 1,519,531 to 1,520,403
_1231
DvMF_1232: DvMF_1232 - formate dehydrogenase accessory protein FdhD, putative (RefSeq), at 1,520,400 to 1,521,224
_1232
Position (kb)
1518
1519
1520 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1517.442 kb on - strand, within DvMF_1229 at 1517.458 kb on + strand, within DvMF_1229 at 1517.507 kb on + strand, within DvMF_1229 at 1517.539 kb on - strand, within DvMF_1229 at 1517.766 kb on - strand, within DvMF_1229 at 1517.773 kb on + strand, within DvMF_1229 at 1517.781 kb on - strand, within DvMF_1229 at 1518.270 kb on - strand at 1518.783 kb on - strand, within DvMF_1230 at 1519.037 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.039 kb on + strand, within DvMF_1230 at 1519.047 kb on - strand, within DvMF_1230 at 1519.047 kb on - strand, within DvMF_1230 at 1519.244 kb on + strand, within DvMF_1230 at 1519.284 kb on - strand, within DvMF_1230 at 1519.302 kb on - strand at 1519.855 kb on + strand, within DvMF_1231 at 1519.999 kb on + strand, within DvMF_1231 at 1520.331 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 1,517,442 - DvMF_1229 0.60 -0.8 1,517,458 + DvMF_1229 0.61 +0.2 1,517,507 + DvMF_1229 0.65 -0.6 1,517,539 - DvMF_1229 0.67 +0.2 1,517,766 - DvMF_1229 0.83 -0.1 1,517,773 + DvMF_1229 0.84 -0.6 1,517,781 - DvMF_1229 0.84 -0.6 1,518,270 - -0.1 1,518,783 - DvMF_1230 0.43 -2.8 1,519,037 + DvMF_1230 0.66 -2.5 1,519,039 + DvMF_1230 0.66 -1.5 1,519,039 + DvMF_1230 0.66 -0.8 1,519,039 + DvMF_1230 0.66 -1.5 1,519,039 + DvMF_1230 0.66 -2.0 1,519,039 + DvMF_1230 0.66 -1.3 1,519,039 + DvMF_1230 0.66 -1.0 1,519,039 + DvMF_1230 0.66 -2.0 1,519,047 - DvMF_1230 0.67 -1.8 1,519,047 - DvMF_1230 0.67 -3.0 1,519,244 + DvMF_1230 0.85 -1.9 1,519,284 - DvMF_1230 0.89 -2.5 1,519,302 - -3.2 1,519,855 + DvMF_1231 0.37 -2.2 1,519,999 + DvMF_1231 0.54 -2.3 1,520,331 - -0.5
Or see this region's nucleotide sequence