Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1157 and DvMF_1158 are separated by 131 nucleotides DvMF_1158 and DvMF_1159 overlap by 1 nucleotides
DvMF_1157: DvMF_1157 - putative PAS/PAC sensor protein (RefSeq), at 1,420,444 to 1,422,615
_1157
DvMF_1158: DvMF_1158 - transglutaminase family protein cysteine peptidase BTLCP (RefSeq), at 1,422,747 to 1,424,039
_1158
DvMF_1159: DvMF_1159 - type I secretion membrane fusion protein, HlyD family (RefSeq), at 1,424,039 to 1,425,439
_1159
Position (kb)
1422
1423
1424
1425 Strain fitness (log2 ratio)
-2
-1
0
1 at 1421.758 kb on + strand, within DvMF_1157 at 1421.879 kb on + strand, within DvMF_1157 at 1421.948 kb on + strand, within DvMF_1157 at 1421.948 kb on + strand, within DvMF_1157 at 1421.967 kb on - strand, within DvMF_1157 at 1422.276 kb on + strand, within DvMF_1157 at 1422.284 kb on - strand, within DvMF_1157 at 1422.353 kb on + strand, within DvMF_1157 at 1422.366 kb on - strand, within DvMF_1157 at 1422.461 kb on + strand at 1422.613 kb on + strand at 1422.958 kb on - strand, within DvMF_1158 at 1423.188 kb on + strand, within DvMF_1158 at 1423.355 kb on - strand, within DvMF_1158 at 1423.601 kb on + strand, within DvMF_1158 at 1424.093 kb on + strand at 1424.233 kb on + strand, within DvMF_1159 at 1424.294 kb on + strand, within DvMF_1159 at 1424.306 kb on + strand, within DvMF_1159 at 1424.488 kb on + strand, within DvMF_1159 at 1424.488 kb on + strand, within DvMF_1159 at 1424.496 kb on - strand, within DvMF_1159 at 1424.701 kb on + strand, within DvMF_1159 at 1424.709 kb on - strand, within DvMF_1159 at 1424.709 kb on - strand, within DvMF_1159 at 1424.709 kb on - strand, within DvMF_1159 at 1424.768 kb on - strand, within DvMF_1159
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 1,421,758 + DvMF_1157 0.60 -0.4 1,421,879 + DvMF_1157 0.66 -0.8 1,421,948 + DvMF_1157 0.69 -1.1 1,421,948 + DvMF_1157 0.69 -0.9 1,421,967 - DvMF_1157 0.70 -1.5 1,422,276 + DvMF_1157 0.84 -0.3 1,422,284 - DvMF_1157 0.85 -0.9 1,422,353 + DvMF_1157 0.88 -1.1 1,422,366 - DvMF_1157 0.88 -1.1 1,422,461 + -0.6 1,422,613 + -1.5 1,422,958 - DvMF_1158 0.16 -1.0 1,423,188 + DvMF_1158 0.34 -1.9 1,423,355 - DvMF_1158 0.47 -0.9 1,423,601 + DvMF_1158 0.66 -0.8 1,424,093 + -1.1 1,424,233 + DvMF_1159 0.14 -1.1 1,424,294 + DvMF_1159 0.18 -1.1 1,424,306 + DvMF_1159 0.19 -1.3 1,424,488 + DvMF_1159 0.32 -0.9 1,424,488 + DvMF_1159 0.32 -1.0 1,424,496 - DvMF_1159 0.33 -0.9 1,424,701 + DvMF_1159 0.47 -0.8 1,424,709 - DvMF_1159 0.48 -0.5 1,424,709 - DvMF_1159 0.48 -0.9 1,424,709 - DvMF_1159 0.48 -1.0 1,424,768 - DvMF_1159 0.52 -1.0
Or see this region's nucleotide sequence