Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1105

Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1103 and DvMF_1104 are separated by 23 nucleotidesDvMF_1104 and DvMF_1105 are separated by 74 nucleotidesDvMF_1105 and DvMF_1106 are separated by 650 nucleotides DvMF_1103: DvMF_1103 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 1,352,724 to 1,353,293 _1103 DvMF_1104: DvMF_1104 - hypothetical protein (RefSeq), at 1,353,317 to 1,353,988 _1104 DvMF_1105: DvMF_1105 - hypothetical protein (RefSeq), at 1,354,063 to 1,354,461 _1105 DvMF_1106: DvMF_1106 - phage uncharacterized protein-like protein (RefSeq), at 1,355,112 to 1,356,917 _1106 Position (kb) 1354 1355Strain fitness (log2 ratio) -2 -1 0 1at 1354.223 kb on - strand, within DvMF_1105at 1354.409 kb on + strand, within DvMF_1105at 1354.507 kb on - strandat 1354.645 kb on + strandat 1354.671 kb on - strandat 1354.942 kb on - strandat 1355.077 kb on + strandat 1355.132 kb on - strandat 1355.367 kb on - strand, within DvMF_1106at 1355.374 kb on - strand, within DvMF_1106

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 %
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1,354,223 - DvMF_1105 0.40 -2.0
1,354,409 + DvMF_1105 0.87 -0.4
1,354,507 - -0.4
1,354,645 + -0.2
1,354,671 - +0.4
1,354,942 - -1.1
1,355,077 + -0.0
1,355,132 - -0.4
1,355,367 - DvMF_1106 0.14 -0.1
1,355,374 - DvMF_1106 0.15 +0.0

Or see this region's nucleotide sequence