Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1031 and DvMF_1032 are separated by 319 nucleotides DvMF_1032 and DvMF_1033 overlap by 4 nucleotides DvMF_1033 and DvMF_1034 are separated by 11 nucleotides
DvMF_1031: DvMF_1031 - twitching motility protein (RefSeq), at 1,251,284 to 1,252,585
_1031
DvMF_1032: DvMF_1032 - hypothetical protein (RefSeq), at 1,252,905 to 1,253,342
_1032
DvMF_1033: DvMF_1033 - hypothetical protein (RefSeq), at 1,253,339 to 1,253,809
_1033
DvMF_1034: DvMF_1034 - hypothetical protein (RefSeq), at 1,253,821 to 1,257,135
_1034
Position (kb)
1253
1254 Strain fitness (log2 ratio)
-1
0
1 at 1252.496 kb on + strand at 1252.505 kb on + strand at 1252.523 kb on + strand at 1252.531 kb on - strand at 1252.600 kb on - strand at 1252.723 kb on - strand at 1252.738 kb on + strand at 1252.775 kb on + strand at 1253.270 kb on - strand, within DvMF_1032 at 1253.272 kb on + strand, within DvMF_1032 at 1253.280 kb on - strand, within DvMF_1032 at 1253.287 kb on + strand, within DvMF_1032 at 1253.295 kb on - strand, within DvMF_1032 at 1253.564 kb on - strand, within DvMF_1033 at 1253.629 kb on + strand, within DvMF_1033 at 1253.842 kb on - strand at 1254.071 kb on + strand at 1254.356 kb on + strand, within DvMF_1034 at 1254.363 kb on + strand, within DvMF_1034 at 1254.371 kb on - strand, within DvMF_1034 at 1254.697 kb on + strand, within DvMF_1034 at 1254.794 kb on - strand, within DvMF_1034
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 1,252,496 + -0.3 1,252,505 + +0.0 1,252,523 + +0.0 1,252,531 - +0.0 1,252,600 - -0.2 1,252,723 - -0.4 1,252,738 + -0.3 1,252,775 + -0.9 1,253,270 - DvMF_1032 0.83 -0.7 1,253,272 + DvMF_1032 0.84 -1.5 1,253,280 - DvMF_1032 0.86 -0.7 1,253,287 + DvMF_1032 0.87 -0.5 1,253,295 - DvMF_1032 0.89 -0.5 1,253,564 - DvMF_1033 0.48 -1.4 1,253,629 + DvMF_1033 0.62 -0.6 1,253,842 - -1.1 1,254,071 + -0.3 1,254,356 + DvMF_1034 0.16 -0.3 1,254,363 + DvMF_1034 0.16 -0.7 1,254,371 - DvMF_1034 0.17 -0.7 1,254,697 + DvMF_1034 0.26 -0.5 1,254,794 - DvMF_1034 0.29 -0.7
Or see this region's nucleotide sequence