Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1025 and DvMF_1026 are separated by 4 nucleotides DvMF_1026 and DvMF_1027 are separated by 26 nucleotides DvMF_1027 and DvMF_1028 are separated by 58 nucleotides
DvMF_1025: DvMF_1025 - hypothetical protein (RefSeq), at 1,244,708 to 1,245,256
_1025
DvMF_1026: DvMF_1026 - hypothetical protein (RefSeq), at 1,245,261 to 1,245,866
_1026
DvMF_1027: DvMF_1027 - type II and III secretion system protein (RefSeq), at 1,245,893 to 1,247,551
_1027
DvMF_1028: DvMF_1028 - type II secretion system protein E (RefSeq), at 1,247,610 to 1,249,316
_1028
Position (kb)
1245
1246
1247
1248 Strain fitness (log2 ratio)
-1
0
1 at 1244.947 kb on - strand, within DvMF_1025 at 1245.165 kb on - strand, within DvMF_1025 at 1245.500 kb on - strand, within DvMF_1026 at 1245.677 kb on + strand, within DvMF_1026 at 1245.695 kb on - strand, within DvMF_1026 at 1245.721 kb on + strand, within DvMF_1026 at 1245.738 kb on - strand, within DvMF_1026 at 1245.802 kb on - strand, within DvMF_1026 at 1245.917 kb on + strand at 1245.925 kb on - strand at 1245.975 kb on - strand at 1246.133 kb on + strand, within DvMF_1027 at 1246.165 kb on + strand, within DvMF_1027 at 1246.301 kb on + strand, within DvMF_1027 at 1246.448 kb on + strand, within DvMF_1027 at 1247.199 kb on + strand, within DvMF_1027 at 1247.259 kb on - strand, within DvMF_1027 at 1247.267 kb on - strand, within DvMF_1027 at 1247.446 kb on - strand at 1247.451 kb on - strand at 1247.542 kb on - strand at 1247.606 kb on - strand at 1247.655 kb on - strand at 1247.680 kb on - strand at 1247.721 kb on - strand at 1247.738 kb on - strand at 1247.822 kb on - strand, within DvMF_1028 at 1247.824 kb on + strand, within DvMF_1028 at 1247.859 kb on + strand, within DvMF_1028 at 1247.889 kb on + strand, within DvMF_1028 at 1248.017 kb on + strand, within DvMF_1028 at 1248.227 kb on + strand, within DvMF_1028 at 1248.349 kb on + strand, within DvMF_1028 at 1248.502 kb on + strand, within DvMF_1028
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 1,244,947 - DvMF_1025 0.44 -0.6 1,245,165 - DvMF_1025 0.83 -0.6 1,245,500 - DvMF_1026 0.39 -0.8 1,245,677 + DvMF_1026 0.69 -0.8 1,245,695 - DvMF_1026 0.72 -0.7 1,245,721 + DvMF_1026 0.76 -0.4 1,245,738 - DvMF_1026 0.79 -0.4 1,245,802 - DvMF_1026 0.89 -0.7 1,245,917 + -1.2 1,245,925 - -0.9 1,245,975 - -0.6 1,246,133 + DvMF_1027 0.14 -0.7 1,246,165 + DvMF_1027 0.16 -1.2 1,246,301 + DvMF_1027 0.25 -1.1 1,246,448 + DvMF_1027 0.33 -0.5 1,247,199 + DvMF_1027 0.79 -1.3 1,247,259 - DvMF_1027 0.82 -0.6 1,247,267 - DvMF_1027 0.83 -0.7 1,247,446 - -0.5 1,247,451 - -0.5 1,247,542 - -0.9 1,247,606 - -0.5 1,247,655 - -0.4 1,247,680 - -0.4 1,247,721 - -0.7 1,247,738 - -0.0 1,247,822 - DvMF_1028 0.12 -0.3 1,247,824 + DvMF_1028 0.13 -0.6 1,247,859 + DvMF_1028 0.15 -0.2 1,247,889 + DvMF_1028 0.16 -0.7 1,248,017 + DvMF_1028 0.24 -0.2 1,248,227 + DvMF_1028 0.36 -0.6 1,248,349 + DvMF_1028 0.43 -0.5 1,248,502 + DvMF_1028 0.52 -0.8
Or see this region's nucleotide sequence