Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gltX and DvMF_0997 are separated by 257 nucleotides DvMF_0997 and DvMF_0998 are separated by 314 nucleotides DvMF_0998 and DvMF_0999 overlap by 14 nucleotides
DvMF_0996: gltX - glutamyl-tRNA synthetase (RefSeq), at 1,210,482 to 1,211,876
gltX
DvMF_0997: DvMF_0997 - nitrogen-fixing NifU domain protein (RefSeq), at 1,212,134 to 1,212,367
_0997
DvMF_0998: DvMF_0998 - hypothetical protein (RefSeq), at 1,212,682 to 1,213,581
_0998
DvMF_0999: DvMF_0999 - MATE efflux family protein (RefSeq), at 1,213,568 to 1,214,989
_0999
Position (kb)
1212
1213
1214 Strain fitness (log2 ratio)
-2
-1
0
1 at 1211.960 kb on + strand at 1211.968 kb on - strand at 1212.149 kb on - strand at 1212.219 kb on + strand, within DvMF_0997 at 1212.222 kb on - strand, within DvMF_0997 at 1213.099 kb on + strand, within DvMF_0998 at 1213.387 kb on - strand, within DvMF_0998 at 1213.444 kb on - strand, within DvMF_0998 at 1213.453 kb on + strand, within DvMF_0998 at 1213.454 kb on + strand, within DvMF_0998 at 1213.462 kb on - strand, within DvMF_0998 at 1213.745 kb on + strand, within DvMF_0999 at 1214.035 kb on - strand, within DvMF_0999 at 1214.168 kb on + strand, within DvMF_0999 at 1214.355 kb on - strand, within DvMF_0999 at 1214.398 kb on - strand, within DvMF_0999 at 1214.436 kb on - strand, within DvMF_0999 at 1214.481 kb on - strand, within DvMF_0999
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 1,211,960 + -0.2 1,211,968 - -0.0 1,212,149 - -0.4 1,212,219 + DvMF_0997 0.36 -0.1 1,212,222 - DvMF_0997 0.38 -0.1 1,213,099 + DvMF_0998 0.46 -2.6 1,213,387 - DvMF_0998 0.78 +1.2 1,213,444 - DvMF_0998 0.85 +0.5 1,213,453 + DvMF_0998 0.86 -1.2 1,213,454 + DvMF_0998 0.86 -0.4 1,213,462 - DvMF_0998 0.87 -1.5 1,213,745 + DvMF_0999 0.12 -0.3 1,214,035 - DvMF_0999 0.33 -0.4 1,214,168 + DvMF_0999 0.42 -0.0 1,214,355 - DvMF_0999 0.55 -0.2 1,214,398 - DvMF_0999 0.58 -0.1 1,214,436 - DvMF_0999 0.61 -0.1 1,214,481 - DvMF_0999 0.64 +0.1
Or see this region's nucleotide sequence