Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0967 and DvMF_0968 are separated by 576 nucleotides DvMF_0968 and rplM are separated by 506 nucleotides rplM and rpsI are separated by 22 nucleotides
DvMF_0967: DvMF_0967 - putative transcriptional regulator, XRE family (RefSeq), at 1,173,724 to 1,174,221
_0967
DvMF_0968: DvMF_0968 - hypothetical protein (RefSeq), at 1,174,798 to 1,176,069
_0968
DvMF_0969: rplM - 50S ribosomal protein L13 (RefSeq), at 1,176,576 to 1,177,010
rplM
DvMF_0970: rpsI - 30S ribosomal protein S9 (RefSeq), at 1,177,033 to 1,177,425
rpsI
Position (kb)
1174
1175
1176
1177 Strain fitness (log2 ratio)
-2
-1
0
1 at 1174.067 kb on + strand, within DvMF_0967 at 1174.557 kb on - strand at 1174.592 kb on - strand at 1174.654 kb on - strand at 1174.798 kb on - strand at 1174.984 kb on - strand, within DvMF_0968 at 1175.148 kb on + strand, within DvMF_0968 at 1175.170 kb on - strand, within DvMF_0968 at 1175.272 kb on + strand, within DvMF_0968 at 1175.280 kb on - strand, within DvMF_0968 at 1175.381 kb on + strand, within DvMF_0968 at 1175.572 kb on - strand, within DvMF_0968 at 1175.657 kb on - strand, within DvMF_0968 at 1175.811 kb on - strand, within DvMF_0968 at 1175.958 kb on + strand at 1175.972 kb on + strand at 1176.193 kb on - strand at 1176.286 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 1,174,067 + DvMF_0967 0.69 -0.2 1,174,557 - -0.2 1,174,592 - -0.4 1,174,654 - +0.0 1,174,798 - -0.3 1,174,984 - DvMF_0968 0.15 -0.6 1,175,148 + DvMF_0968 0.28 -1.0 1,175,170 - DvMF_0968 0.29 -0.6 1,175,272 + DvMF_0968 0.37 -0.7 1,175,280 - DvMF_0968 0.38 -1.8 1,175,381 + DvMF_0968 0.46 -1.2 1,175,572 - DvMF_0968 0.61 -0.8 1,175,657 - DvMF_0968 0.68 -0.7 1,175,811 - DvMF_0968 0.80 -0.8 1,175,958 + -0.8 1,175,972 + -0.4 1,176,193 - -0.9 1,176,286 - -0.4
Or see this region's nucleotide sequence