Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0474 and DvMF_0475 are separated by 0 nucleotides DvMF_0475 and DvMF_0476 are separated by 217 nucleotides DvMF_0476 and DvMF_0477 are separated by 238 nucleotides
DvMF_0474: DvMF_0474 - acetyltransferase (RefSeq), at 556,483 to 556,950
_0474
DvMF_0475: DvMF_0475 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 556,951 to 557,424
_0475
DvMF_0476: DvMF_0476 - vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) <small>(from data)</small>, at 557,642 to 560,098
_0476
DvMF_0477: DvMF_0477 - putative RNA polymerase, sigma 70 family subunit (RefSeq), at 560,337 to 561,761
_0477
Position (kb) 557
558
559
560
561 Strain fitness (log2 ratio) -1
0
1 at 556.659 kb on - strand, within DvMF_0474 at 556.737 kb on + strand, within DvMF_0474 at 556.832 kb on + strand, within DvMF_0474 at 556.882 kb on + strand, within DvMF_0474 at 557.110 kb on - strand, within DvMF_0475 at 557.145 kb on - strand, within DvMF_0475 at 557.815 kb on + strand at 558.014 kb on + strand, within DvMF_0476 at 558.189 kb on + strand, within DvMF_0476 at 558.417 kb on - strand, within DvMF_0476 at 558.577 kb on - strand, within DvMF_0476 at 558.595 kb on + strand, within DvMF_0476 at 558.959 kb on + strand, within DvMF_0476 at 559.427 kb on + strand, within DvMF_0476 at 559.505 kb on - strand, within DvMF_0476 at 559.773 kb on - strand, within DvMF_0476 at 559.773 kb on - strand, within DvMF_0476 at 559.857 kb on - strand at 560.004 kb on - strand at 560.275 kb on + strand at 560.375 kb on + strand at 560.729 kb on + strand, within DvMF_0477
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 556,659 - DvMF_0474 0.38 -0.2 556,737 + DvMF_0474 0.54 -0.4 556,832 + DvMF_0474 0.75 -1.2 556,882 + DvMF_0474 0.85 -0.0 557,110 - DvMF_0475 0.34 -0.4 557,145 - DvMF_0475 0.41 -0.7 557,815 + -0.6 558,014 + DvMF_0476 0.15 -1.1 558,189 + DvMF_0476 0.22 -1.0 558,417 - DvMF_0476 0.32 -1.2 558,577 - DvMF_0476 0.38 +0.4 558,595 + DvMF_0476 0.39 -0.8 558,959 + DvMF_0476 0.54 -1.0 559,427 + DvMF_0476 0.73 -0.7 559,505 - DvMF_0476 0.76 -1.5 559,773 - DvMF_0476 0.87 -0.7 559,773 - DvMF_0476 0.87 -1.2 559,857 - -0.6 560,004 - -0.6 560,275 + -0.3 560,375 + -0.8 560,729 + DvMF_0477 0.28 +0.2
Or see this region's nucleotide sequence