Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0421 and DvMF_0422 are separated by 129 nucleotides DvMF_0422 and DvMF_0423 are separated by 4 nucleotides DvMF_0423 and DvMF_0424 are separated by 247 nucleotides
DvMF_0421: DvMF_0421 - hypothetical protein (RefSeq), at 496,794 to 497,363
_0421
DvMF_0422: DvMF_0422 - PTS system sorbose subfamily IIB component (RefSeq), at 497,493 to 497,957
_0422
DvMF_0423: DvMF_0423 - PTS system fructose subfamily IIA component (RefSeq), at 497,962 to 498,480
_0423
DvMF_0424: DvMF_0424 - hypothetical protein (RefSeq), at 498,728 to 499,609
_0424
Position (kb) 497
498
499 Strain fitness (log2 ratio) -1
0
1 at 497.089 kb on - strand, within DvMF_0421 at 497.305 kb on + strand, within DvMF_0421 at 497.308 kb on - strand at 497.773 kb on - strand, within DvMF_0422 at 498.096 kb on + strand, within DvMF_0423 at 498.096 kb on + strand, within DvMF_0423 at 498.270 kb on + strand, within DvMF_0423 at 498.286 kb on + strand, within DvMF_0423 at 498.418 kb on - strand, within DvMF_0423 at 498.438 kb on - strand at 498.438 kb on - strand at 498.455 kb on + strand at 499.120 kb on - strand, within DvMF_0424 at 499.217 kb on + strand, within DvMF_0424 at 499.422 kb on - strand, within DvMF_0424 at 499.450 kb on - strand, within DvMF_0424
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 497,089 - DvMF_0421 0.52 -0.3 497,305 + DvMF_0421 0.90 -0.1 497,308 - -0.3 497,773 - DvMF_0422 0.60 +0.7 498,096 + DvMF_0423 0.26 -1.0 498,096 + DvMF_0423 0.26 -0.8 498,270 + DvMF_0423 0.59 -0.7 498,286 + DvMF_0423 0.62 -0.2 498,418 - DvMF_0423 0.88 -1.5 498,438 - -0.2 498,438 - -0.6 498,455 + +0.2 499,120 - DvMF_0424 0.44 -0.9 499,217 + DvMF_0424 0.55 -0.8 499,422 - DvMF_0424 0.79 -0.2 499,450 - DvMF_0424 0.82 -0.7
Or see this region's nucleotide sequence