Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0070 and DvMF_0071 are separated by 15 nucleotides DvMF_0071 and DvMF_0072 are separated by 428 nucleotides DvMF_0072 and DvMF_0073 are separated by 122 nucleotides
DvMF_0070: DvMF_0070 - Nitrate reductase gamma subunit (RefSeq), at 90,370 to 91,377
_0070
DvMF_0071: DvMF_0071 - hypothetical protein (RefSeq), at 91,393 to 91,938
_0071
DvMF_0072: DvMF_0072 - hypothetical protein (RefSeq), at 92,367 to 93,407
_0072
DvMF_0073: DvMF_0073 - protein of unknown function DUF45 (RefSeq), at 93,530 to 94,480
_0073
Position (kb)
92
93
94 Strain fitness (log2 ratio)
-1
0
1 at 92.110 kb on + strand at 92.450 kb on - strand at 92.729 kb on - strand, within DvMF_0072 at 92.736 kb on - strand, within DvMF_0072 at 92.955 kb on - strand, within DvMF_0072 at 93.078 kb on - strand, within DvMF_0072 at 93.490 kb on - strand at 93.604 kb on - strand at 93.622 kb on + strand at 93.630 kb on - strand, within DvMF_0073 at 93.768 kb on - strand, within DvMF_0073 at 93.803 kb on - strand, within DvMF_0073 at 94.045 kb on - strand, within DvMF_0073 at 94.050 kb on - strand, within DvMF_0073 at 94.128 kb on + strand, within DvMF_0073 at 94.293 kb on + strand, within DvMF_0073 at 94.337 kb on - strand, within DvMF_0073 at 94.347 kb on + strand, within DvMF_0073 at 94.351 kb on + strand, within DvMF_0073 at 94.361 kb on - strand, within DvMF_0073 at 94.386 kb on + strand at 94.394 kb on - strand at 94.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 92,110 + +0.2 92,450 - -1.1 92,729 - DvMF_0072 0.35 -1.1 92,736 - DvMF_0072 0.35 -1.0 92,955 - DvMF_0072 0.56 -0.9 93,078 - DvMF_0072 0.68 -0.6 93,490 - -0.2 93,604 - -0.1 93,622 + -1.1 93,630 - DvMF_0073 0.11 -0.4 93,768 - DvMF_0073 0.25 -0.5 93,803 - DvMF_0073 0.29 -0.6 94,045 - DvMF_0073 0.54 -0.6 94,050 - DvMF_0073 0.55 -0.1 94,128 + DvMF_0073 0.63 -0.4 94,293 + DvMF_0073 0.80 -0.5 94,337 - DvMF_0073 0.85 -0.4 94,347 + DvMF_0073 0.86 -0.1 94,351 + DvMF_0073 0.86 -0.6 94,361 - DvMF_0073 0.87 -0.5 94,386 + -0.1 94,394 - -0.8 94,394 - -0.8
Or see this region's nucleotide sequence