Experiment: MoYLS4 with Dimethyl Sulfoxide 5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0014 and DvMF_0015 are separated by 7 nucleotides DvMF_0015 and DvMF_0016 overlap by 4 nucleotides DvMF_0016 and DvMF_0017 are separated by 71 nucleotides DvMF_0017 and DvMF_0018 are separated by 3 nucleotides
DvMF_0014: DvMF_0014 - hypothetical protein (RefSeq), at 18,759 to 21,203
_0014
DvMF_0015: DvMF_0015 - peptidase C26 (RefSeq), at 21,211 to 21,834
_0015
DvMF_0016: DvMF_0016 - transferase, putative (RefSeq), at 21,831 to 22,622
_0016
DvMF_0017: DvMF_0017 - Methyltransferase type 11 (RefSeq), at 22,694 to 23,458
_0017
DvMF_0018: DvMF_0018 - adenylylsulfate kinase (RefSeq), at 23,462 to 24,049
_0018
Position (kb)
21
22
23 Strain fitness (log2 ratio)
-1
0
1 at 21.162 kb on + strand at 21.197 kb on - strand at 21.205 kb on - strand at 21.241 kb on - strand at 21.285 kb on - strand, within DvMF_0015 at 21.836 kb on - strand at 22.011 kb on - strand, within DvMF_0016 at 22.263 kb on + strand, within DvMF_0016 at 22.379 kb on + strand, within DvMF_0016 at 22.399 kb on - strand, within DvMF_0016 at 22.399 kb on - strand, within DvMF_0016 at 22.399 kb on - strand, within DvMF_0016 at 23.086 kb on + strand, within DvMF_0017 at 23.304 kb on + strand, within DvMF_0017 at 23.334 kb on + strand, within DvMF_0017 at 23.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 5 % remove 21,162 + -0.3 21,197 - -0.9 21,205 - -0.1 21,241 - -1.5 21,285 - DvMF_0015 0.12 -0.5 21,836 - -0.8 22,011 - DvMF_0016 0.23 -0.4 22,263 + DvMF_0016 0.55 -0.6 22,379 + DvMF_0016 0.69 -1.3 22,399 - DvMF_0016 0.72 -0.7 22,399 - DvMF_0016 0.72 -1.6 22,399 - DvMF_0016 0.72 -0.3 23,086 + DvMF_0017 0.51 -0.7 23,304 + DvMF_0017 0.80 -0.6 23,334 + DvMF_0017 0.84 -0.5 23,460 - -0.3
Or see this region's nucleotide sequence