Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6049 and Pf6N2E2_6050 are separated by 63 nucleotides Pf6N2E2_6050 and Pf6N2E2_6051 are separated by 125 nucleotides
Pf6N2E2_6049 - hydrolase, haloacid dehalogenase-like family, at 6,868,132 to 6,868,827
_6049
Pf6N2E2_6050 - Oxidoreductase, short chain dehydrogenase/reductase family, at 6,868,891 to 6,869,637
_6050
Pf6N2E2_6051 - Transcriptional regulator, LysR family, at 6,869,763 to 6,870,686
_6051
Position (kb)
6868
6869
6870 Strain fitness (log2 ratio)
-1
0
1
2 at 6867.955 kb on - strand at 6868.216 kb on + strand, within Pf6N2E2_6049 at 6868.216 kb on + strand, within Pf6N2E2_6049 at 6868.216 kb on + strand, within Pf6N2E2_6049 at 6868.217 kb on - strand, within Pf6N2E2_6049 at 6868.217 kb on - strand, within Pf6N2E2_6049 at 6868.217 kb on - strand, within Pf6N2E2_6049 at 6868.217 kb on - strand, within Pf6N2E2_6049 at 6868.217 kb on - strand, within Pf6N2E2_6049 at 6868.217 kb on - strand, within Pf6N2E2_6049 at 6868.319 kb on - strand, within Pf6N2E2_6049 at 6868.319 kb on - strand, within Pf6N2E2_6049 at 6868.495 kb on - strand, within Pf6N2E2_6049 at 6868.935 kb on + strand at 6868.935 kb on + strand at 6868.935 kb on + strand at 6868.935 kb on + strand at 6868.935 kb on + strand at 6868.935 kb on + strand at 6868.935 kb on + strand at 6868.936 kb on - strand at 6868.936 kb on - strand at 6868.936 kb on - strand at 6868.936 kb on - strand at 6868.936 kb on - strand at 6868.937 kb on + strand at 6868.937 kb on + strand at 6868.937 kb on + strand at 6868.937 kb on + strand at 6868.937 kb on + strand at 6868.937 kb on + strand at 6868.937 kb on + strand at 6868.937 kb on + strand at 6868.938 kb on - strand at 6868.938 kb on - strand at 6868.961 kb on + strand at 6868.961 kb on + strand at 6868.962 kb on - strand at 6868.962 kb on - strand at 6868.962 kb on - strand at 6869.169 kb on - strand, within Pf6N2E2_6050 at 6869.169 kb on - strand, within Pf6N2E2_6050 at 6869.522 kb on + strand, within Pf6N2E2_6050 at 6869.522 kb on + strand, within Pf6N2E2_6050 at 6869.522 kb on + strand, within Pf6N2E2_6050 at 6869.522 kb on + strand, within Pf6N2E2_6050 at 6869.522 kb on + strand, within Pf6N2E2_6050 at 6869.523 kb on - strand, within Pf6N2E2_6050 at 6869.613 kb on + strand at 6869.631 kb on + strand at 6869.631 kb on + strand at 6869.687 kb on + strand at 6869.687 kb on + strand at 6869.687 kb on + strand at 6869.712 kb on + strand at 6869.712 kb on + strand at 6869.712 kb on + strand at 6869.712 kb on + strand at 6869.712 kb on + strand at 6869.726 kb on + strand at 6869.726 kb on + strand at 6869.727 kb on - strand at 6869.727 kb on - strand at 6869.728 kb on + strand at 6869.729 kb on - strand at 6869.864 kb on + strand, within Pf6N2E2_6051 at 6869.865 kb on - strand, within Pf6N2E2_6051 at 6869.900 kb on - strand, within Pf6N2E2_6051 at 6870.078 kb on + strand, within Pf6N2E2_6051 at 6870.078 kb on + strand, within Pf6N2E2_6051 at 6870.078 kb on + strand, within Pf6N2E2_6051 at 6870.078 kb on + strand, within Pf6N2E2_6051 at 6870.078 kb on + strand, within Pf6N2E2_6051 at 6870.078 kb on + strand, within Pf6N2E2_6051 at 6870.078 kb on + strand, within Pf6N2E2_6051 at 6870.078 kb on + strand, within Pf6N2E2_6051 at 6870.078 kb on + strand, within Pf6N2E2_6051 at 6870.079 kb on - strand, within Pf6N2E2_6051 at 6870.079 kb on - strand, within Pf6N2E2_6051 at 6870.079 kb on - strand, within Pf6N2E2_6051 at 6870.079 kb on - strand, within Pf6N2E2_6051 at 6870.079 kb on - strand, within Pf6N2E2_6051 at 6870.079 kb on - strand, within Pf6N2E2_6051 at 6870.079 kb on - strand, within Pf6N2E2_6051 at 6870.079 kb on - strand, within Pf6N2E2_6051 at 6870.079 kb on - strand, within Pf6N2E2_6051 at 6870.157 kb on + strand, within Pf6N2E2_6051 at 6870.553 kb on - strand, within Pf6N2E2_6051 at 6870.553 kb on - strand, within Pf6N2E2_6051 at 6870.579 kb on + strand, within Pf6N2E2_6051 at 6870.579 kb on + strand, within Pf6N2E2_6051 at 6870.579 kb on + strand, within Pf6N2E2_6051 at 6870.579 kb on + strand, within Pf6N2E2_6051 at 6870.579 kb on + strand, within Pf6N2E2_6051 at 6870.579 kb on + strand, within Pf6N2E2_6051 at 6870.580 kb on - strand, within Pf6N2E2_6051 at 6870.580 kb on - strand, within Pf6N2E2_6051 at 6870.580 kb on - strand, within Pf6N2E2_6051 at 6870.582 kb on + strand, within Pf6N2E2_6051 at 6870.583 kb on - strand, within Pf6N2E2_6051
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 6,867,955 - -0.1 6,868,216 + Pf6N2E2_6049 0.12 +0.1 6,868,216 + Pf6N2E2_6049 0.12 +1.1 6,868,216 + Pf6N2E2_6049 0.12 -0.3 6,868,217 - Pf6N2E2_6049 0.12 -0.3 6,868,217 - Pf6N2E2_6049 0.12 +0.1 6,868,217 - Pf6N2E2_6049 0.12 +0.4 6,868,217 - Pf6N2E2_6049 0.12 +0.9 6,868,217 - Pf6N2E2_6049 0.12 +0.5 6,868,217 - Pf6N2E2_6049 0.12 +1.0 6,868,319 - Pf6N2E2_6049 0.27 +0.2 6,868,319 - Pf6N2E2_6049 0.27 -0.7 6,868,495 - Pf6N2E2_6049 0.52 -0.7 6,868,935 + +0.8 6,868,935 + +0.5 6,868,935 + -1.3 6,868,935 + -0.2 6,868,935 + +0.6 6,868,935 + +0.8 6,868,935 + +0.1 6,868,936 - +0.3 6,868,936 - +0.5 6,868,936 - -1.1 6,868,936 - +0.8 6,868,936 - -0.3 6,868,937 + +0.8 6,868,937 + -0.5 6,868,937 + +1.1 6,868,937 + +0.4 6,868,937 + +0.4 6,868,937 + +0.0 6,868,937 + +0.5 6,868,937 + -0.2 6,868,938 - +0.1 6,868,938 - -0.4 6,868,961 + -0.2 6,868,961 + +0.5 6,868,962 - +1.0 6,868,962 - -0.6 6,868,962 - +0.5 6,869,169 - Pf6N2E2_6050 0.37 +0.2 6,869,169 - Pf6N2E2_6050 0.37 +0.0 6,869,522 + Pf6N2E2_6050 0.84 +0.7 6,869,522 + Pf6N2E2_6050 0.84 +0.5 6,869,522 + Pf6N2E2_6050 0.84 +0.3 6,869,522 + Pf6N2E2_6050 0.84 +0.9 6,869,522 + Pf6N2E2_6050 0.84 +0.7 6,869,523 - Pf6N2E2_6050 0.85 +0.9 6,869,613 + -0.3 6,869,631 + +0.0 6,869,631 + +0.3 6,869,687 + +0.6 6,869,687 + -1.2 6,869,687 + -0.1 6,869,712 + -0.8 6,869,712 + -0.1 6,869,712 + +0.6 6,869,712 + +0.5 6,869,712 + +0.5 6,869,726 + -1.1 6,869,726 + +0.2 6,869,727 - +0.4 6,869,727 - -0.2 6,869,728 + +0.1 6,869,729 - -0.0 6,869,864 + Pf6N2E2_6051 0.11 -0.5 6,869,865 - Pf6N2E2_6051 0.11 +0.4 6,869,900 - Pf6N2E2_6051 0.15 -0.3 6,870,078 + Pf6N2E2_6051 0.34 -0.9 6,870,078 + Pf6N2E2_6051 0.34 +0.2 6,870,078 + Pf6N2E2_6051 0.34 -0.4 6,870,078 + Pf6N2E2_6051 0.34 +0.4 6,870,078 + Pf6N2E2_6051 0.34 +0.7 6,870,078 + Pf6N2E2_6051 0.34 -0.0 6,870,078 + Pf6N2E2_6051 0.34 +1.1 6,870,078 + Pf6N2E2_6051 0.34 -0.1 6,870,078 + Pf6N2E2_6051 0.34 +0.0 6,870,079 - Pf6N2E2_6051 0.34 +1.9 6,870,079 - Pf6N2E2_6051 0.34 +0.3 6,870,079 - Pf6N2E2_6051 0.34 -0.0 6,870,079 - Pf6N2E2_6051 0.34 -1.0 6,870,079 - Pf6N2E2_6051 0.34 +0.4 6,870,079 - Pf6N2E2_6051 0.34 -0.0 6,870,079 - Pf6N2E2_6051 0.34 -1.3 6,870,079 - Pf6N2E2_6051 0.34 -0.3 6,870,079 - Pf6N2E2_6051 0.34 +0.4 6,870,157 + Pf6N2E2_6051 0.43 +1.1 6,870,553 - Pf6N2E2_6051 0.85 +0.6 6,870,553 - Pf6N2E2_6051 0.85 +0.5 6,870,579 + Pf6N2E2_6051 0.88 +0.7 6,870,579 + Pf6N2E2_6051 0.88 +0.3 6,870,579 + Pf6N2E2_6051 0.88 +0.9 6,870,579 + Pf6N2E2_6051 0.88 +1.3 6,870,579 + Pf6N2E2_6051 0.88 +0.4 6,870,579 + Pf6N2E2_6051 0.88 +0.1 6,870,580 - Pf6N2E2_6051 0.88 +0.3 6,870,580 - Pf6N2E2_6051 0.88 +0.2 6,870,580 - Pf6N2E2_6051 0.88 +0.0 6,870,582 + Pf6N2E2_6051 0.89 -0.3 6,870,583 - Pf6N2E2_6051 0.89 -0.0
Or see this region's nucleotide sequence