Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5828 and Pf6N2E2_5829 are separated by 230 nucleotides Pf6N2E2_5829 and Pf6N2E2_5830 are separated by 71 nucleotides Pf6N2E2_5830 and Pf6N2E2_5831 are separated by 60 nucleotides
Pf6N2E2_5828 - FOG: Ankyrin repeat, at 6,645,513 to 6,646,031
_5828
Pf6N2E2_5829 - FIG00955145: hypothetical protein, at 6,646,262 to 6,646,792
_5829
Pf6N2E2_5830 - FIG00960829: hypothetical protein, at 6,646,864 to 6,647,055
_5830
Pf6N2E2_5831 - Major facilitator family transporter, at 6,647,116 to 6,648,582
_5831
Position (kb)
6646
6647
6648 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6646.149 kb on + strand at 6646.404 kb on - strand, within Pf6N2E2_5829 at 6646.487 kb on + strand, within Pf6N2E2_5829 at 6646.487 kb on + strand, within Pf6N2E2_5829 at 6646.487 kb on + strand, within Pf6N2E2_5829 at 6646.487 kb on + strand, within Pf6N2E2_5829 at 6646.487 kb on + strand, within Pf6N2E2_5829 at 6646.487 kb on + strand, within Pf6N2E2_5829 at 6646.487 kb on + strand, within Pf6N2E2_5829 at 6646.487 kb on + strand, within Pf6N2E2_5829 at 6646.487 kb on + strand, within Pf6N2E2_5829 at 6646.488 kb on - strand, within Pf6N2E2_5829 at 6646.488 kb on - strand, within Pf6N2E2_5829 at 6646.488 kb on - strand, within Pf6N2E2_5829 at 6646.488 kb on - strand, within Pf6N2E2_5829 at 6646.488 kb on - strand, within Pf6N2E2_5829 at 6646.637 kb on + strand, within Pf6N2E2_5829 at 6646.694 kb on + strand, within Pf6N2E2_5829 at 6646.695 kb on - strand, within Pf6N2E2_5829 at 6646.708 kb on - strand, within Pf6N2E2_5829 at 6646.708 kb on - strand, within Pf6N2E2_5829 at 6646.798 kb on + strand at 6646.831 kb on + strand at 6646.831 kb on + strand at 6646.832 kb on - strand at 6646.832 kb on - strand at 6646.914 kb on + strand, within Pf6N2E2_5830 at 6646.926 kb on + strand, within Pf6N2E2_5830 at 6646.934 kb on + strand, within Pf6N2E2_5830 at 6646.935 kb on - strand, within Pf6N2E2_5830 at 6646.935 kb on - strand, within Pf6N2E2_5830 at 6646.935 kb on - strand, within Pf6N2E2_5830 at 6646.935 kb on - strand, within Pf6N2E2_5830 at 6647.103 kb on - strand at 6647.103 kb on - strand at 6647.225 kb on + strand at 6647.225 kb on + strand at 6647.226 kb on - strand at 6647.226 kb on - strand at 6647.282 kb on + strand, within Pf6N2E2_5831 at 6647.282 kb on + strand, within Pf6N2E2_5831 at 6647.282 kb on + strand, within Pf6N2E2_5831 at 6647.282 kb on + strand, within Pf6N2E2_5831 at 6647.282 kb on + strand, within Pf6N2E2_5831 at 6647.282 kb on + strand, within Pf6N2E2_5831 at 6647.282 kb on + strand, within Pf6N2E2_5831 at 6647.282 kb on + strand, within Pf6N2E2_5831 at 6647.283 kb on - strand, within Pf6N2E2_5831 at 6647.283 kb on - strand, within Pf6N2E2_5831 at 6647.283 kb on - strand, within Pf6N2E2_5831 at 6647.283 kb on - strand, within Pf6N2E2_5831 at 6647.324 kb on + strand, within Pf6N2E2_5831 at 6647.324 kb on + strand, within Pf6N2E2_5831 at 6647.324 kb on + strand, within Pf6N2E2_5831 at 6647.324 kb on + strand, within Pf6N2E2_5831 at 6647.324 kb on + strand, within Pf6N2E2_5831 at 6647.324 kb on + strand, within Pf6N2E2_5831 at 6647.324 kb on + strand, within Pf6N2E2_5831 at 6647.324 kb on + strand, within Pf6N2E2_5831 at 6647.324 kb on + strand, within Pf6N2E2_5831 at 6647.324 kb on + strand, within Pf6N2E2_5831 at 6647.324 kb on + strand, within Pf6N2E2_5831 at 6647.325 kb on - strand, within Pf6N2E2_5831 at 6647.325 kb on - strand, within Pf6N2E2_5831 at 6647.325 kb on - strand, within Pf6N2E2_5831 at 6647.325 kb on - strand, within Pf6N2E2_5831 at 6647.325 kb on - strand, within Pf6N2E2_5831 at 6647.325 kb on - strand, within Pf6N2E2_5831 at 6647.325 kb on - strand, within Pf6N2E2_5831 at 6647.325 kb on - strand, within Pf6N2E2_5831 at 6647.325 kb on - strand, within Pf6N2E2_5831 at 6647.325 kb on - strand, within Pf6N2E2_5831 at 6647.325 kb on - strand, within Pf6N2E2_5831 at 6647.325 kb on - strand, within Pf6N2E2_5831 at 6647.409 kb on - strand, within Pf6N2E2_5831 at 6647.648 kb on + strand, within Pf6N2E2_5831 at 6647.648 kb on + strand, within Pf6N2E2_5831 at 6647.649 kb on - strand, within Pf6N2E2_5831 at 6647.649 kb on - strand, within Pf6N2E2_5831 at 6647.718 kb on - strand, within Pf6N2E2_5831 at 6648.002 kb on - strand, within Pf6N2E2_5831 at 6648.002 kb on - strand, within Pf6N2E2_5831 at 6648.002 kb on - strand, within Pf6N2E2_5831 at 6648.002 kb on - strand, within Pf6N2E2_5831 at 6648.002 kb on - strand, within Pf6N2E2_5831 at 6648.002 kb on - strand, within Pf6N2E2_5831 at 6648.002 kb on - strand, within Pf6N2E2_5831
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 6,646,149 + +1.4 6,646,404 - Pf6N2E2_5829 0.27 +0.5 6,646,487 + Pf6N2E2_5829 0.42 -0.1 6,646,487 + Pf6N2E2_5829 0.42 -0.0 6,646,487 + Pf6N2E2_5829 0.42 +0.1 6,646,487 + Pf6N2E2_5829 0.42 -0.0 6,646,487 + Pf6N2E2_5829 0.42 +0.0 6,646,487 + Pf6N2E2_5829 0.42 -0.0 6,646,487 + Pf6N2E2_5829 0.42 -0.4 6,646,487 + Pf6N2E2_5829 0.42 +0.4 6,646,487 + Pf6N2E2_5829 0.42 +0.2 6,646,488 - Pf6N2E2_5829 0.43 -0.2 6,646,488 - Pf6N2E2_5829 0.43 -0.2 6,646,488 - Pf6N2E2_5829 0.43 +0.7 6,646,488 - Pf6N2E2_5829 0.43 -0.2 6,646,488 - Pf6N2E2_5829 0.43 +0.1 6,646,637 + Pf6N2E2_5829 0.71 -0.5 6,646,694 + Pf6N2E2_5829 0.81 +0.6 6,646,695 - Pf6N2E2_5829 0.82 -0.1 6,646,708 - Pf6N2E2_5829 0.84 -2.0 6,646,708 - Pf6N2E2_5829 0.84 -1.2 6,646,798 + +0.0 6,646,831 + +0.3 6,646,831 + +0.8 6,646,832 - +0.6 6,646,832 - -0.3 6,646,914 + Pf6N2E2_5830 0.26 -0.3 6,646,926 + Pf6N2E2_5830 0.32 -0.1 6,646,934 + Pf6N2E2_5830 0.36 -1.2 6,646,935 - Pf6N2E2_5830 0.37 +0.0 6,646,935 - Pf6N2E2_5830 0.37 -0.9 6,646,935 - Pf6N2E2_5830 0.37 -1.6 6,646,935 - Pf6N2E2_5830 0.37 -0.6 6,647,103 - -0.0 6,647,103 - +0.5 6,647,225 + +0.7 6,647,225 + -0.3 6,647,226 - -0.4 6,647,226 - +0.3 6,647,282 + Pf6N2E2_5831 0.11 +0.6 6,647,282 + Pf6N2E2_5831 0.11 -0.7 6,647,282 + Pf6N2E2_5831 0.11 -0.3 6,647,282 + Pf6N2E2_5831 0.11 -1.3 6,647,282 + Pf6N2E2_5831 0.11 -0.0 6,647,282 + Pf6N2E2_5831 0.11 -0.4 6,647,282 + Pf6N2E2_5831 0.11 -0.4 6,647,282 + Pf6N2E2_5831 0.11 +0.4 6,647,283 - Pf6N2E2_5831 0.11 +0.4 6,647,283 - Pf6N2E2_5831 0.11 -1.0 6,647,283 - Pf6N2E2_5831 0.11 +0.0 6,647,283 - Pf6N2E2_5831 0.11 -0.5 6,647,324 + Pf6N2E2_5831 0.14 -0.2 6,647,324 + Pf6N2E2_5831 0.14 +0.3 6,647,324 + Pf6N2E2_5831 0.14 +0.5 6,647,324 + Pf6N2E2_5831 0.14 +1.6 6,647,324 + Pf6N2E2_5831 0.14 -0.4 6,647,324 + Pf6N2E2_5831 0.14 +0.8 6,647,324 + Pf6N2E2_5831 0.14 +0.8 6,647,324 + Pf6N2E2_5831 0.14 +0.3 6,647,324 + Pf6N2E2_5831 0.14 -0.1 6,647,324 + Pf6N2E2_5831 0.14 +0.6 6,647,324 + Pf6N2E2_5831 0.14 +0.7 6,647,325 - Pf6N2E2_5831 0.14 +1.0 6,647,325 - Pf6N2E2_5831 0.14 +0.2 6,647,325 - Pf6N2E2_5831 0.14 +0.2 6,647,325 - Pf6N2E2_5831 0.14 +0.5 6,647,325 - Pf6N2E2_5831 0.14 -0.4 6,647,325 - Pf6N2E2_5831 0.14 +0.5 6,647,325 - Pf6N2E2_5831 0.14 +0.1 6,647,325 - Pf6N2E2_5831 0.14 +0.1 6,647,325 - Pf6N2E2_5831 0.14 -1.2 6,647,325 - Pf6N2E2_5831 0.14 -0.3 6,647,325 - Pf6N2E2_5831 0.14 +0.7 6,647,325 - Pf6N2E2_5831 0.14 -1.0 6,647,409 - Pf6N2E2_5831 0.20 -0.3 6,647,648 + Pf6N2E2_5831 0.36 +1.8 6,647,648 + Pf6N2E2_5831 0.36 -1.1 6,647,649 - Pf6N2E2_5831 0.36 +0.3 6,647,649 - Pf6N2E2_5831 0.36 +0.2 6,647,718 - Pf6N2E2_5831 0.41 +0.5 6,648,002 - Pf6N2E2_5831 0.60 +0.8 6,648,002 - Pf6N2E2_5831 0.60 -0.9 6,648,002 - Pf6N2E2_5831 0.60 -0.1 6,648,002 - Pf6N2E2_5831 0.60 +0.7 6,648,002 - Pf6N2E2_5831 0.60 -0.6 6,648,002 - Pf6N2E2_5831 0.60 -0.1 6,648,002 - Pf6N2E2_5831 0.60 -1.4
Or see this region's nucleotide sequence