Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4671

Experiment: Tetracycline 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0001 mg/ml
5,399,177	+				+0.4
5,399,177	+				-0.1
5,399,177	+				+0.4
5,399,177	+				+0.5
5,399,178	-				-0.4
5,399,216	+				+0.1
5,399,216	+				+0.8
5,399,216	+				-0.2
5,399,216	+				+0.9
5,399,216	+				-0.1
5,399,216	+				-0.4
5,399,216	+				+0.9
5,399,216	+				-0.6
5,399,216	+				-0.4
5,399,216	+				+0.7
5,399,216	+				+0.6
5,399,217	-				-0.5
5,399,217	-				-0.5
5,399,217	-				+0.1
5,399,217	-				-1.0
5,399,217	-				+0.1
5,399,217	-				+0.9
5,399,217	-				-0.2
5,399,217	-				+0.9
5,399,217	-				-0.2
5,399,222	+				+0.3
5,399,223	-				+0.3
5,399,223	-				-0.5
5,399,344	+				+0.2
5,399,352	+				-0.3
5,399,352	+				+0.2
5,399,352	+				+0.6
5,399,352	+				+0.3
5,399,352	+				-0.1
5,399,352	+				-0.1
5,399,352	+				+0.3
5,399,353	-				-0.4
5,399,353	-				+0.2
5,399,353	-				-0.3
5,399,538	+		Pf6N2E2_4670	0.32	+0.0
5,399,539	-		Pf6N2E2_4670	0.32	-0.0
5,399,539	-		Pf6N2E2_4670	0.32	+0.2
5,399,562	+		Pf6N2E2_4670	0.35	+0.3
5,399,562	+		Pf6N2E2_4670	0.35	-0.9
5,399,562	+		Pf6N2E2_4670	0.35	+0.8
5,399,604	+		Pf6N2E2_4670	0.41	-0.2
5,399,604	+		Pf6N2E2_4670	0.41	+1.2
5,399,604	+		Pf6N2E2_4670	0.41	-0.6
5,399,605	-		Pf6N2E2_4670	0.41	-0.9
5,399,682	+		Pf6N2E2_4670	0.52	+0.1
5,399,712	+		Pf6N2E2_4670	0.56	+0.6
5,399,712	+		Pf6N2E2_4670	0.56	+0.1
5,399,762	+		Pf6N2E2_4670	0.62	-0.7
5,399,762	+		Pf6N2E2_4670	0.62	+1.1
5,399,763	-		Pf6N2E2_4670	0.63	+1.3
5,399,763	-		Pf6N2E2_4670	0.63	-0.2
5,399,763	-		Pf6N2E2_4670	0.63	+0.7
5,399,826	+		Pf6N2E2_4670	0.71	-0.7
5,399,826	+		Pf6N2E2_4670	0.71	-0.3
5,399,826	+		Pf6N2E2_4670	0.71	-0.1
5,399,827	-		Pf6N2E2_4670	0.71	+1.0
5,399,827	-		Pf6N2E2_4670	0.71	-0.1
5,399,827	-		Pf6N2E2_4670	0.71	-0.1
5,399,838	+		Pf6N2E2_4670	0.73	+0.1
5,399,841	+		Pf6N2E2_4670	0.73	+0.2
5,399,841	+		Pf6N2E2_4670	0.73	-0.3
5,399,841	+		Pf6N2E2_4670	0.73	-0.3
5,399,842	-		Pf6N2E2_4670	0.73	+0.5
5,399,842	-		Pf6N2E2_4670	0.73	-0.9
5,399,867	-		Pf6N2E2_4670	0.77	+0.0
5,400,006	+				+0.2
5,400,007	-				+0.7
5,400,007	-				+0.1
5,400,007	-				-0.2
5,400,036	+				+0.1
5,400,036	+				+0.6
5,400,037	-				-1.8
5,400,037	-				-0.6
5,400,037	-				+0.1
5,400,066	+				-0.2
5,400,067	-				+0.4
5,400,067	-				+0.8
5,400,105	-				-0.1
5,400,302	+				-0.4
5,400,302	+				+0.1
5,400,302	+				-0.3
5,400,302	+				-0.7
5,400,302	+				-0.1
5,400,303	-				-0.2
5,400,303	-				+0.4
5,400,303	-				+0.9
5,400,427	+		Pf6N2E2_4671	0.14	-0.4
5,400,427	+		Pf6N2E2_4671	0.14	-0.1
5,400,427	+		Pf6N2E2_4671	0.14	+1.1
5,400,428	-		Pf6N2E2_4671	0.14	-0.6
5,400,428	-		Pf6N2E2_4671	0.14	+0.6
5,400,428	-		Pf6N2E2_4671	0.14	+0.2
5,400,468	+		Pf6N2E2_4671	0.16	-0.3
5,400,468	+		Pf6N2E2_4671	0.16	-2.1
5,400,468	+		Pf6N2E2_4671	0.16	+0.4
5,400,468	+		Pf6N2E2_4671	0.16	+0.6
5,400,468	+		Pf6N2E2_4671	0.16	+0.7
5,400,468	+		Pf6N2E2_4671	0.16	+0.1
5,400,469	-		Pf6N2E2_4671	0.16	-0.2
5,400,482	+		Pf6N2E2_4671	0.17	+1.2
5,400,601	+		Pf6N2E2_4671	0.22	+0.5
5,400,602	-		Pf6N2E2_4671	0.22	+0.6
5,400,625	+		Pf6N2E2_4671	0.23	-0.0
5,400,625	+		Pf6N2E2_4671	0.23	+1.2
5,400,625	+		Pf6N2E2_4671	0.23	+0.2
5,400,626	-		Pf6N2E2_4671	0.23	-0.2
5,400,626	-		Pf6N2E2_4671	0.23	+0.2
5,400,647	+		Pf6N2E2_4671	0.24	-1.4
5,400,861	+		Pf6N2E2_4671	0.35	-0.3
5,400,862	-		Pf6N2E2_4671	0.35	+0.1
5,400,991	+		Pf6N2E2_4671	0.41	+1.6
5,400,991	+		Pf6N2E2_4671	0.41	+0.5
5,400,991	+		Pf6N2E2_4671	0.41	+0.7
5,400,991	+		Pf6N2E2_4671	0.41	+0.2
5,400,991	+		Pf6N2E2_4671	0.41	+0.4
5,400,991	+		Pf6N2E2_4671	0.41	-0.0
5,400,992	-		Pf6N2E2_4671	0.41	+0.2
5,400,992	-		Pf6N2E2_4671	0.41	-0.1
5,400,992	-		Pf6N2E2_4671	0.41	-1.8
5,400,992	-		Pf6N2E2_4671	0.41	+0.8
5,401,019	+		Pf6N2E2_4671	0.42	+0.9
5,401,019	+		Pf6N2E2_4671	0.42	+1.1
5,401,020	-		Pf6N2E2_4671	0.42	+0.7
5,401,033	+		Pf6N2E2_4671	0.43	+0.7
5,401,034	-		Pf6N2E2_4671	0.43	-0.2
5,401,069	+		Pf6N2E2_4671	0.44	-0.4
5,401,070	-		Pf6N2E2_4671	0.45	+0.2
5,401,470	+		Pf6N2E2_4671	0.64	-0.1
5,401,470	+		Pf6N2E2_4671	0.64	+0.3
5,401,471	-		Pf6N2E2_4671	0.64	-0.0
5,401,471	-		Pf6N2E2_4671	0.64	-0.1
5,401,471	-		Pf6N2E2_4671	0.64	+0.3
5,401,507	+		Pf6N2E2_4671	0.65	+1.0
5,401,507	+		Pf6N2E2_4671	0.65	+1.0
5,401,508	-		Pf6N2E2_4671	0.65	-0.1
5,401,508	-		Pf6N2E2_4671	0.65	+0.5
5,401,508	-		Pf6N2E2_4671	0.65	+0.2
5,401,508	-		Pf6N2E2_4671	0.65	+0.9
5,401,508	-		Pf6N2E2_4671	0.65	+0.8
5,401,513	+		Pf6N2E2_4671	0.66	+0.2
5,401,514	-		Pf6N2E2_4671	0.66	-0.6
5,401,558	+		Pf6N2E2_4671	0.68	+0.2
5,401,558	+		Pf6N2E2_4671	0.68	+0.4
5,401,559	-		Pf6N2E2_4671	0.68	-0.6
5,401,559	-		Pf6N2E2_4671	0.68	+1.1
5,401,559	-		Pf6N2E2_4671	0.68	+0.5
5,401,832	-		Pf6N2E2_4671	0.81	+0.3
5,401,832	-		Pf6N2E2_4671	0.81	+0.1
5,401,855	-		Pf6N2E2_4671	0.82	+1.2
5,401,855	-		Pf6N2E2_4671	0.82	-0.3
5,401,919	-		Pf6N2E2_4671	0.85	-0.6
5,401,919	-		Pf6N2E2_4671	0.85	-0.6
5,402,043	+				+0.5
5,402,043	+				+0.7
5,402,043	+				-0.1
5,402,043	+				+0.3
5,402,044	-				+0.0
5,402,044	-				+0.2
5,402,044	-				+1.1
5,402,044	-				+0.8
5,402,044	-				-0.8
5,402,044	-				-0.1
5,402,240	+				-0.1
5,402,240	+				-0.4
5,402,240	+				-0.4
5,402,241	-				+0.5
5,402,241	-				+0.4
5,402,241	-				+0.2
5,402,241	-				-0.4
5,402,242	+				-0.0
5,402,243	-				+0.1
5,402,243	-				-0.3
5,402,243	-				+0.6
5,402,243	-				-0.4
5,402,243	-				-0.5
5,402,252	+				+0.4
5,402,253	-				-0.6
5,402,348	-				-0.2
5,402,348	-				-0.6
5,402,589	+				+0.1
5,402,590	-				-0.0
5,402,590	-				+0.2
5,402,590	-				-0.2
5,402,679	+				-0.2
5,402,679	+				+0.9
5,402,679	+				+0.1
5,402,680	-				+0.6
5,402,841	+		Pf6N2E2_4672	0.22	+0.0
5,402,841	+		Pf6N2E2_4672	0.22	-0.2
5,402,841	+		Pf6N2E2_4672	0.22	+0.2
5,402,842	-		Pf6N2E2_4672	0.22	+0.3