Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05390

Experiment: formate vitamin complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS05380 and MMJJ_RS05385 are separated by 14 nucleotidesMMJJ_RS05385 and MMJJ_RS05390 are separated by 11 nucleotidesMMJJ_RS05390 and MMJJ_RS05395 are separated by 12 nucleotides MMJJ_RS05380: MMJJ_RS05380 - hypothetical protein, at 999,093 to 999,584 _RS05380 MMJJ_RS05385: MMJJ_RS05385 - hypothetical protein, at 999,599 to 1,000,402 _RS05385 MMJJ_RS05390: MMJJ_RS05390 - tRNA pseudouridine(13) synthase TruD, at 1,000,414 to 1,001,583 _RS05390 MMJJ_RS05395: MMJJ_RS05395 - argininosuccinate lyase, at 1,001,596 to 1,003,041 _RS05395 Position (kb) 1000 1001 1002Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 999.461 kb on + strand, within MMJJ_RS05380at 999.565 kb on + strandat 999.574 kb on + strandat 999.596 kb on + strandat 999.616 kb on - strandat 999.616 kb on - strandat 999.616 kb on - strandat 999.617 kb on + strandat 999.617 kb on + strandat 999.619 kb on + strandat 999.619 kb on + strandat 999.623 kb on + strandat 999.627 kb on - strandat 999.649 kb on - strandat 999.702 kb on - strand, within MMJJ_RS05385at 999.726 kb on - strand, within MMJJ_RS05385at 999.726 kb on - strand, within MMJJ_RS05385at 999.727 kb on + strand, within MMJJ_RS05385at 999.727 kb on + strand, within MMJJ_RS05385at 999.740 kb on - strandat 999.745 kb on - strand, within MMJJ_RS05385at 999.746 kb on + strand, within MMJJ_RS05385at 999.746 kb on + strand, within MMJJ_RS05385at 999.778 kb on - strand, within MMJJ_RS05385at 999.778 kb on - strand, within MMJJ_RS05385at 999.779 kb on + strand, within MMJJ_RS05385at 999.804 kb on + strand, within MMJJ_RS05385at 999.812 kb on + strand, within MMJJ_RS05385at 999.846 kb on - strand, within MMJJ_RS05385at 999.846 kb on - strand, within MMJJ_RS05385at 999.847 kb on + strand, within MMJJ_RS05385at 999.847 kb on + strand, within MMJJ_RS05385at 999.847 kb on + strand, within MMJJ_RS05385at 999.852 kb on - strand, within MMJJ_RS05385at 999.852 kb on - strand, within MMJJ_RS05385at 999.852 kb on - strand, within MMJJ_RS05385at 999.855 kb on - strand, within MMJJ_RS05385at 999.855 kb on - strand, within MMJJ_RS05385at 999.856 kb on + strand, within MMJJ_RS05385at 999.856 kb on + strand, within MMJJ_RS05385at 999.856 kb on + strand, within MMJJ_RS05385at 999.944 kb on - strand, within MMJJ_RS05385at 999.945 kb on + strand, within MMJJ_RS05385at 1000.038 kb on - strand, within MMJJ_RS05385at 1000.039 kb on + strand, within MMJJ_RS05385at 1000.088 kb on - strand, within MMJJ_RS05385at 1000.098 kb on - strand, within MMJJ_RS05385at 1000.098 kb on - strand, within MMJJ_RS05385at 1000.098 kb on - strand, within MMJJ_RS05385at 1000.099 kb on + strand, within MMJJ_RS05385at 1000.099 kb on + strand, within MMJJ_RS05385at 1000.099 kb on + strand, within MMJJ_RS05385at 1000.110 kb on - strand, within MMJJ_RS05385at 1000.159 kb on + strand, within MMJJ_RS05385at 1000.159 kb on + strand, within MMJJ_RS05385at 1000.159 kb on + strand, within MMJJ_RS05385at 1000.210 kb on - strand, within MMJJ_RS05385at 1000.217 kb on - strand, within MMJJ_RS05385at 1000.278 kb on + strand, within MMJJ_RS05385at 1000.278 kb on + strand, within MMJJ_RS05385at 1000.348 kb on + strandat 1000.404 kb on - strandat 1000.405 kb on + strandat 1000.411 kb on + strandat 1000.411 kb on + strandat 1000.448 kb on - strandat 1000.570 kb on + strand, within MMJJ_RS05390at 1000.624 kb on - strand, within MMJJ_RS05390at 1000.646 kb on + strand, within MMJJ_RS05390at 1000.646 kb on + strand, within MMJJ_RS05390at 1000.651 kb on + strand, within MMJJ_RS05390at 1000.671 kb on - strand, within MMJJ_RS05390at 1000.672 kb on + strand, within MMJJ_RS05390at 1000.687 kb on - strand, within MMJJ_RS05390at 1000.727 kb on - strand, within MMJJ_RS05390at 1000.727 kb on - strand, within MMJJ_RS05390at 1000.727 kb on - strand, within MMJJ_RS05390at 1000.727 kb on - strand, within MMJJ_RS05390at 1000.729 kb on - strand, within MMJJ_RS05390at 1000.730 kb on + strand, within MMJJ_RS05390at 1000.794 kb on - strand, within MMJJ_RS05390at 1000.795 kb on + strand, within MMJJ_RS05390at 1000.798 kb on + strand, within MMJJ_RS05390at 1000.936 kb on + strand, within MMJJ_RS05390at 1001.017 kb on - strand, within MMJJ_RS05390at 1001.018 kb on + strand, within MMJJ_RS05390at 1001.036 kb on - strand, within MMJJ_RS05390at 1001.063 kb on - strand, within MMJJ_RS05390at 1001.064 kb on + strand, within MMJJ_RS05390at 1001.072 kb on - strand, within MMJJ_RS05390at 1001.073 kb on + strand, within MMJJ_RS05390at 1001.077 kb on - strand, within MMJJ_RS05390at 1001.104 kb on + strand, within MMJJ_RS05390at 1001.108 kb on + strand, within MMJJ_RS05390at 1001.197 kb on + strand, within MMJJ_RS05390at 1001.212 kb on + strand, within MMJJ_RS05390at 1001.212 kb on + strand, within MMJJ_RS05390at 1001.216 kb on - strandat 1001.217 kb on + strand, within MMJJ_RS05390at 1001.217 kb on + strand, within MMJJ_RS05390at 1001.218 kb on - strand, within MMJJ_RS05390at 1001.218 kb on - strand, within MMJJ_RS05390at 1001.218 kb on - strand, within MMJJ_RS05390at 1001.218 kb on - strand, within MMJJ_RS05390at 1001.219 kb on + strand, within MMJJ_RS05390at 1001.219 kb on + strand, within MMJJ_RS05390at 1001.227 kb on - strand, within MMJJ_RS05390at 1001.281 kb on + strand, within MMJJ_RS05390at 1001.286 kb on + strand, within MMJJ_RS05390at 1001.309 kb on - strand, within MMJJ_RS05390at 1001.309 kb on - strand, within MMJJ_RS05390at 1001.322 kb on + strand, within MMJJ_RS05390at 1001.322 kb on + strand, within MMJJ_RS05390at 1001.327 kb on + strand, within MMJJ_RS05390at 1001.511 kb on + strandat 1001.511 kb on + strandat 1001.516 kb on - strandat 1001.529 kb on + strandat 1001.542 kb on - strandat 1001.542 kb on - strandat 1001.542 kb on - strandat 1001.550 kb on - strandat 1001.550 kb on - strandat 1001.551 kb on + strandat 1001.552 kb on - strandat 1001.553 kb on + strandat 1001.571 kb on - strandat 1001.574 kb on - strandat 1001.581 kb on - strandat 1001.582 kb on + strandat 1001.647 kb on - strandat 1001.853 kb on - strand, within MMJJ_RS05395at 1002.031 kb on + strand, within MMJJ_RS05395at 1002.092 kb on - strand, within MMJJ_RS05395

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Per-strain Table

Position Strand Gene LocusTag Fraction formate vitamin complete
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999,461 + MMJJ_RS05380 0.75 -2.9
999,565 + -3.2
999,574 + +0.2
999,596 + -1.6
999,616 - -0.4
999,616 - -0.2
999,616 - -2.5
999,617 + +0.7
999,617 + -0.7
999,619 + +0.2
999,619 + -0.3
999,623 + +0.4
999,627 - -0.2
999,649 - +0.3
999,702 - MMJJ_RS05385 0.13 +1.1
999,726 - MMJJ_RS05385 0.16 -0.3
999,726 - MMJJ_RS05385 0.16 +0.1
999,727 + MMJJ_RS05385 0.16 +0.3
999,727 + MMJJ_RS05385 0.16 -0.6
999,740 - +3.3
999,745 - MMJJ_RS05385 0.18 -0.9
999,746 + MMJJ_RS05385 0.18 -0.5
999,746 + MMJJ_RS05385 0.18 +0.1
999,778 - MMJJ_RS05385 0.22 -1.7
999,778 - MMJJ_RS05385 0.22 -1.8
999,779 + MMJJ_RS05385 0.22 +0.2
999,804 + MMJJ_RS05385 0.25 +0.0
999,812 + MMJJ_RS05385 0.26 +0.2
999,846 - MMJJ_RS05385 0.31 -0.1
999,846 - MMJJ_RS05385 0.31 +2.3
999,847 + MMJJ_RS05385 0.31 +0.5
999,847 + MMJJ_RS05385 0.31 +0.1
999,847 + MMJJ_RS05385 0.31 -0.1
999,852 - MMJJ_RS05385 0.31 +0.6
999,852 - MMJJ_RS05385 0.31 -0.4
999,852 - MMJJ_RS05385 0.31 -0.5
999,855 - MMJJ_RS05385 0.32 +0.5
999,855 - MMJJ_RS05385 0.32 -1.4
999,856 + MMJJ_RS05385 0.32 +0.2
999,856 + MMJJ_RS05385 0.32 -3.0
999,856 + MMJJ_RS05385 0.32 -0.1
999,944 - MMJJ_RS05385 0.43 +0.3
999,945 + MMJJ_RS05385 0.43 -2.6
1,000,038 - MMJJ_RS05385 0.55 +0.0
1,000,039 + MMJJ_RS05385 0.55 +0.9
1,000,088 - MMJJ_RS05385 0.61 -0.1
1,000,098 - MMJJ_RS05385 0.62 -0.4
1,000,098 - MMJJ_RS05385 0.62 -0.0
1,000,098 - MMJJ_RS05385 0.62 +0.0
1,000,099 + MMJJ_RS05385 0.62 -0.3
1,000,099 + MMJJ_RS05385 0.62 -0.1
1,000,099 + MMJJ_RS05385 0.62 -0.0
1,000,110 - MMJJ_RS05385 0.64 -0.2
1,000,159 + MMJJ_RS05385 0.70 +1.0
1,000,159 + MMJJ_RS05385 0.70 +0.5
1,000,159 + MMJJ_RS05385 0.70 +0.2
1,000,210 - MMJJ_RS05385 0.76 +0.4
1,000,217 - MMJJ_RS05385 0.77 +0.5
1,000,278 + MMJJ_RS05385 0.84 -0.0
1,000,278 + MMJJ_RS05385 0.84 -0.0
1,000,348 + -0.1
1,000,404 - +0.1
1,000,405 + +0.3
1,000,411 + -0.4
1,000,411 + +0.1
1,000,448 - +1.0
1,000,570 + MMJJ_RS05390 0.13 -0.8
1,000,624 - MMJJ_RS05390 0.18 +0.1
1,000,646 + MMJJ_RS05390 0.20 -0.7
1,000,646 + MMJJ_RS05390 0.20 +0.7
1,000,651 + MMJJ_RS05390 0.20 +0.8
1,000,671 - MMJJ_RS05390 0.22 -0.6
1,000,672 + MMJJ_RS05390 0.22 +0.5
1,000,687 - MMJJ_RS05390 0.23 +1.1
1,000,727 - MMJJ_RS05390 0.27 -0.0
1,000,727 - MMJJ_RS05390 0.27 +0.7
1,000,727 - MMJJ_RS05390 0.27 +0.6
1,000,727 - MMJJ_RS05390 0.27 +0.4
1,000,729 - MMJJ_RS05390 0.27 +0.8
1,000,730 + MMJJ_RS05390 0.27 +0.3
1,000,794 - MMJJ_RS05390 0.32 +0.3
1,000,795 + MMJJ_RS05390 0.33 +0.1
1,000,798 + MMJJ_RS05390 0.33 +0.2
1,000,936 + MMJJ_RS05390 0.45 +0.7
1,001,017 - MMJJ_RS05390 0.52 -0.4
1,001,018 + MMJJ_RS05390 0.52 +0.5
1,001,036 - MMJJ_RS05390 0.53 +0.2
1,001,063 - MMJJ_RS05390 0.55 +0.3
1,001,064 + MMJJ_RS05390 0.56 -0.3
1,001,072 - MMJJ_RS05390 0.56 +1.2
1,001,073 + MMJJ_RS05390 0.56 +0.0
1,001,077 - MMJJ_RS05390 0.57 +1.2
1,001,104 + MMJJ_RS05390 0.59 +0.6
1,001,108 + MMJJ_RS05390 0.59 +0.3
1,001,197 + MMJJ_RS05390 0.67 +1.0
1,001,212 + MMJJ_RS05390 0.68 +0.4
1,001,212 + MMJJ_RS05390 0.68 +0.1
1,001,216 - -0.1
1,001,217 + MMJJ_RS05390 0.69 -0.0
1,001,217 + MMJJ_RS05390 0.69 +1.4
1,001,218 - MMJJ_RS05390 0.69 +1.4
1,001,218 - MMJJ_RS05390 0.69 +0.6
1,001,218 - MMJJ_RS05390 0.69 -1.6
1,001,218 - MMJJ_RS05390 0.69 +0.0
1,001,219 + MMJJ_RS05390 0.69 +0.4
1,001,219 + MMJJ_RS05390 0.69 +0.9
1,001,227 - MMJJ_RS05390 0.69 +0.4
1,001,281 + MMJJ_RS05390 0.74 -0.1
1,001,286 + MMJJ_RS05390 0.75 +0.3
1,001,309 - MMJJ_RS05390 0.76 +0.7
1,001,309 - MMJJ_RS05390 0.76 -2.4
1,001,322 + MMJJ_RS05390 0.78 +0.1
1,001,322 + MMJJ_RS05390 0.78 +0.7
1,001,327 + MMJJ_RS05390 0.78 +0.1
1,001,511 + +0.7
1,001,511 + +0.5
1,001,516 - -0.1
1,001,529 + +0.7
1,001,542 - +0.3
1,001,542 - +0.8
1,001,542 - +1.7
1,001,550 - +0.6
1,001,550 - +0.7
1,001,551 + +0.1
1,001,552 - +0.2
1,001,553 + -0.7
1,001,571 - -0.0
1,001,574 - -0.7
1,001,581 - -0.2
1,001,582 + +1.1
1,001,647 - -1.4
1,001,853 - MMJJ_RS05395 0.18 -1.8
1,002,031 + MMJJ_RS05395 0.30 -0.7
1,002,092 - MMJJ_RS05395 0.34 -0.1

Or see this region's nucleotide sequence