Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0649 and Ga0059261_0650 overlap by 1 nucleotides Ga0059261_0650 and Ga0059261_0651 are separated by 107 nucleotides Ga0059261_0651 and Ga0059261_0652 overlap by 1 nucleotides
Ga0059261_0649: Ga0059261_0649 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 689,386 to 690,795
_0649
Ga0059261_0650: Ga0059261_0650 - Negative regulator of beta-lactamase expression, at 690,795 to 691,502
_0650
Ga0059261_0651: Ga0059261_0651 - Methylase of chemotaxis methyl-accepting proteins, at 691,610 to 692,467
_0651
Ga0059261_0652: Ga0059261_0652 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 692,467 to 693,528
_0652
Position (kb) 690
691
692 Strain fitness (log2 ratio) -2
-1
0
1 at 690.005 kb on + strand, within Ga0059261_0649 at 690.005 kb on + strand, within Ga0059261_0649 at 690.005 kb on + strand, within Ga0059261_0649 at 690.005 kb on + strand, within Ga0059261_0649 at 690.006 kb on - strand, within Ga0059261_0649 at 690.095 kb on + strand, within Ga0059261_0649 at 690.095 kb on + strand, within Ga0059261_0649 at 690.096 kb on - strand, within Ga0059261_0649 at 690.096 kb on - strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.459 kb on + strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.460 kb on - strand, within Ga0059261_0649 at 690.461 kb on - strand, within Ga0059261_0649 at 690.590 kb on + strand, within Ga0059261_0649 at 690.590 kb on + strand, within Ga0059261_0649 at 690.590 kb on + strand, within Ga0059261_0649 at 690.590 kb on + strand, within Ga0059261_0649 at 690.591 kb on - strand, within Ga0059261_0649 at 690.591 kb on - strand, within Ga0059261_0649 at 690.591 kb on - strand, within Ga0059261_0649 at 690.591 kb on - strand, within Ga0059261_0649 at 690.591 kb on - strand, within Ga0059261_0649 at 690.760 kb on - strand at 690.934 kb on + strand, within Ga0059261_0650 at 691.411 kb on + strand, within Ga0059261_0650 at 691.411 kb on + strand, within Ga0059261_0650 at 691.412 kb on - strand, within Ga0059261_0650 at 691.412 kb on - strand, within Ga0059261_0650 at 691.653 kb on + strand at 691.653 kb on + strand at 691.653 kb on + strand at 691.653 kb on + strand at 691.653 kb on + strand at 691.654 kb on - strand at 691.654 kb on - strand at 691.778 kb on - strand, within Ga0059261_0651 at 691.797 kb on + strand, within Ga0059261_0651 at 691.797 kb on + strand, within Ga0059261_0651 at 691.797 kb on + strand, within Ga0059261_0651 at 691.797 kb on + strand, within Ga0059261_0651 at 691.798 kb on - strand, within Ga0059261_0651 at 691.798 kb on - strand, within Ga0059261_0651 at 691.798 kb on - strand, within Ga0059261_0651 at 692.137 kb on + strand, within Ga0059261_0651 at 692.137 kb on + strand, within Ga0059261_0651 at 692.137 kb on + strand, within Ga0059261_0651 at 692.138 kb on - strand, within Ga0059261_0651 at 692.138 kb on - strand, within Ga0059261_0651 at 692.138 kb on - strand, within Ga0059261_0651 at 692.314 kb on + strand, within Ga0059261_0651 at 692.314 kb on + strand, within Ga0059261_0651 at 692.315 kb on - strand, within Ga0059261_0651 at 692.315 kb on - strand, within Ga0059261_0651
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 690,005 + Ga0059261_0649 0.44 -0.2 690,005 + Ga0059261_0649 0.44 -1.4 690,005 + Ga0059261_0649 0.44 +0.1 690,005 + Ga0059261_0649 0.44 +0.6 690,006 - Ga0059261_0649 0.44 -0.8 690,095 + Ga0059261_0649 0.50 +0.0 690,095 + Ga0059261_0649 0.50 +0.2 690,096 - Ga0059261_0649 0.50 -0.8 690,096 - Ga0059261_0649 0.50 +0.4 690,459 + Ga0059261_0649 0.76 +0.2 690,459 + Ga0059261_0649 0.76 +0.0 690,459 + Ga0059261_0649 0.76 -0.9 690,459 + Ga0059261_0649 0.76 -0.6 690,459 + Ga0059261_0649 0.76 +0.0 690,459 + Ga0059261_0649 0.76 +0.1 690,459 + Ga0059261_0649 0.76 -0.0 690,459 + Ga0059261_0649 0.76 +0.4 690,459 + Ga0059261_0649 0.76 -0.1 690,460 - Ga0059261_0649 0.76 +0.1 690,460 - Ga0059261_0649 0.76 -0.0 690,460 - Ga0059261_0649 0.76 -0.5 690,460 - Ga0059261_0649 0.76 +0.0 690,460 - Ga0059261_0649 0.76 -0.3 690,460 - Ga0059261_0649 0.76 -0.1 690,460 - Ga0059261_0649 0.76 +0.1 690,460 - Ga0059261_0649 0.76 +0.1 690,460 - Ga0059261_0649 0.76 -0.7 690,461 - Ga0059261_0649 0.76 +0.4 690,590 + Ga0059261_0649 0.85 +0.2 690,590 + Ga0059261_0649 0.85 +0.5 690,590 + Ga0059261_0649 0.85 -1.0 690,590 + Ga0059261_0649 0.85 -0.3 690,591 - Ga0059261_0649 0.85 +0.3 690,591 - Ga0059261_0649 0.85 -0.2 690,591 - Ga0059261_0649 0.85 -0.1 690,591 - Ga0059261_0649 0.85 -0.2 690,591 - Ga0059261_0649 0.85 -0.8 690,760 - -0.1 690,934 + Ga0059261_0650 0.20 -1.2 691,411 + Ga0059261_0650 0.87 -0.5 691,411 + Ga0059261_0650 0.87 -1.1 691,412 - Ga0059261_0650 0.87 -0.6 691,412 - Ga0059261_0650 0.87 -1.7 691,653 + -0.3 691,653 + +0.9 691,653 + -1.1 691,653 + -1.8 691,653 + -0.5 691,654 - -0.7 691,654 - +0.7 691,778 - Ga0059261_0651 0.20 -1.3 691,797 + Ga0059261_0651 0.22 -0.0 691,797 + Ga0059261_0651 0.22 -0.9 691,797 + Ga0059261_0651 0.22 +0.6 691,797 + Ga0059261_0651 0.22 -0.3 691,798 - Ga0059261_0651 0.22 -0.7 691,798 - Ga0059261_0651 0.22 -0.1 691,798 - Ga0059261_0651 0.22 +0.3 692,137 + Ga0059261_0651 0.61 -0.1 692,137 + Ga0059261_0651 0.61 -0.7 692,137 + Ga0059261_0651 0.61 +0.3 692,138 - Ga0059261_0651 0.62 -0.7 692,138 - Ga0059261_0651 0.62 -0.1 692,138 - Ga0059261_0651 0.62 -0.0 692,314 + Ga0059261_0651 0.82 +0.2 692,314 + Ga0059261_0651 0.82 -0.5 692,315 - Ga0059261_0651 0.82 +0.0 692,315 - Ga0059261_0651 0.82 +0.6
Or see this region's nucleotide sequence