Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03246

Experiment: PYE with Chloramphenicol 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Chloramphenicol 0.0001 mg/ml
3,411,378	+		CCNA_03245	0.27	-0.9
3,411,380	+		CCNA_03245	0.27	+0.8
3,411,386	-		CCNA_03245	0.28	+0.2
3,411,386	-		CCNA_03245	0.28	-1.3
3,411,386	-		CCNA_03245	0.28	+0.0
3,411,512	+		CCNA_03245	0.37	-0.4
3,411,556	+		CCNA_03245	0.41	+1.3
3,411,556	-		CCNA_03245	0.41	-0.3
3,411,564	-		CCNA_03245	0.41	-1.3
3,411,564	-		CCNA_03245	0.41	+2.1
3,411,564	-		CCNA_03245	0.41	-2.0
3,411,564	-		CCNA_03245	0.41	+0.7
3,411,575	+		CCNA_03245	0.42	-0.4
3,411,594	+		CCNA_03245	0.44	-0.7
3,411,594	+		CCNA_03245	0.44	-0.3
3,411,602	-		CCNA_03245	0.44	-1.4
3,411,602	-		CCNA_03245	0.44	-2.1
3,411,629	-		CCNA_03245	0.46	+0.3
3,411,727	-		CCNA_03245	0.54	-0.6
3,411,801	-		CCNA_03245	0.59	-0.9
3,411,801	-		CCNA_03245	0.59	-2.4
3,411,803	+		CCNA_03245	0.59	-0.4
3,411,803	+		CCNA_03245	0.59	+1.3
3,411,811	-		CCNA_03245	0.60	-0.7
3,411,811	-		CCNA_03245	0.60	-1.9
3,411,830	-		CCNA_03245	0.61	-0.0
3,411,851	+		CCNA_03245	0.63	+0.3
3,411,859	-		CCNA_03245	0.64	+0.6
3,411,869	-		CCNA_03245	0.64	+0.1
3,411,872	+		CCNA_03245	0.64	+0.6
3,411,875	-				+0.3
3,411,880	-		CCNA_03245	0.65	+1.4
3,411,890	-		CCNA_03245	0.66	-0.4
3,411,917	+		CCNA_03245	0.68	-0.7
3,411,925	-		CCNA_03245	0.68	-1.5
3,411,930	+		CCNA_03245	0.69	+1.1
3,411,969	+		CCNA_03245	0.72	-0.3
3,411,970	+		CCNA_03245	0.72	+0.6
3,411,970	-		CCNA_03245	0.72	+1.1
3,412,038	+		CCNA_03245	0.77	+0.1
3,412,067	+		CCNA_03245	0.79	-0.6
3,412,089	+		CCNA_03245	0.81	-0.8
3,412,094	-		CCNA_03245	0.81	-1.2
3,412,097	-		CCNA_03245	0.81	-0.2
3,412,101	+		CCNA_03245	0.82	-1.4
3,412,113	-		CCNA_03245	0.83	-1.8
3,412,140	-		CCNA_03245	0.85	-0.7
3,412,156	+		CCNA_03245	0.86	-0.4
3,412,156	+		CCNA_03245	0.86	+0.3
3,412,156	+		CCNA_03245	0.86	-0.8
3,412,156	+		CCNA_03245	0.86	+1.2
3,412,156	+		CCNA_03245	0.86	-0.0
3,412,159	-		CCNA_03245	0.86	+0.8
3,412,164	-		CCNA_03245	0.86	-2.4
3,412,164	-		CCNA_03245	0.86	-0.2
3,412,164	-		CCNA_03245	0.86	+0.6
3,412,164	-		CCNA_03245	0.86	+0.6
3,412,185	-		CCNA_03245	0.88	+1.1
3,412,202	+		CCNA_03245	0.89	-1.1
3,412,221	-				-0.2
3,412,227	+				-1.6
3,412,232	-				+1.4
3,412,235	-				-0.7
3,412,235	-				-1.2
3,412,235	-				+0.0
3,412,286	+				-0.8
3,412,294	-				+0.2
3,412,312	-				+0.3
3,412,323	+				+0.2
3,412,346	-				+1.7
3,412,346	-				+0.6
3,412,348	+				-1.0
3,412,356	-				+0.4
3,412,376	-				+0.3
3,412,376	-				-1.0
3,412,390	-				-0.5
3,412,481	-		CCNA_03246	0.10	-0.2
3,412,498	-		CCNA_03246	0.12	+0.4
3,412,503	+		CCNA_03246	0.12	-1.8
3,412,555	-		CCNA_03246	0.17	+3.1
3,412,570	+		CCNA_03246	0.19	-0.6
3,412,586	+		CCNA_03246	0.20	+1.3
3,412,598	+		CCNA_03246	0.21	+0.7
3,412,615	+		CCNA_03246	0.23	-1.1
3,412,632	+		CCNA_03246	0.25	-1.1
3,412,633	-		CCNA_03246	0.25	+1.1
3,412,641	-		CCNA_03246	0.25	-0.4
3,412,647	-		CCNA_03246	0.26	-0.2
3,412,673	+		CCNA_03246	0.28	-0.4
3,412,678	+		CCNA_03246	0.29	-0.3
3,412,680	-		CCNA_03246	0.29	+0.1
3,412,680	-		CCNA_03246	0.29	+0.5
3,412,733	-		CCNA_03246	0.34	+0.5
3,412,733	-		CCNA_03246	0.34	+0.5
3,412,824	+		CCNA_03246	0.43	-2.0
3,412,829	+		CCNA_03246	0.43	-2.3
3,412,829	+		CCNA_03246	0.43	-0.2
3,412,832	-		CCNA_03246	0.43	+0.7
3,412,837	-		CCNA_03246	0.44	-1.1
3,412,874	+		CCNA_03246	0.47	+0.3
3,412,943	+		CCNA_03246	0.54	-0.3
3,412,951	+		CCNA_03246	0.54	-0.7
3,412,951	-		CCNA_03246	0.54	-0.0
3,412,951	-		CCNA_03246	0.54	+0.1
3,412,963	+		CCNA_03246	0.56	-0.9
3,412,978	-		CCNA_03246	0.57	-0.9
3,412,979	-		CCNA_03246	0.57	-1.8
3,412,997	-		CCNA_03246	0.59	+0.7
3,413,010	-		CCNA_03246	0.60	-1.6
3,413,062	+		CCNA_03246	0.65	-2.6
3,413,084	+				+1.1
3,413,092	-		CCNA_03246	0.68	-0.5
3,413,092	-		CCNA_03246	0.68	-0.4
3,413,092	-		CCNA_03246	0.68	-1.9
3,413,107	+		CCNA_03246	0.69	-1.3
3,413,115	-		CCNA_03246	0.70	+0.3
3,413,122	+		CCNA_03246	0.71	+1.6
3,413,163	+		CCNA_03246	0.74	-0.8
3,413,183	+		CCNA_03246	0.76	+1.6
3,413,198	-		CCNA_03246	0.78	-0.1
3,413,225	-		CCNA_03246	0.80	+1.6
3,413,249	-		CCNA_03246	0.82	+0.6
3,413,263	+		CCNA_03246	0.84	+0.4
3,413,277	+		CCNA_03246	0.85	-0.7
3,413,296	-		CCNA_03246	0.87	-0.8
3,413,303	+		CCNA_03246	0.88	-2.2
3,413,310	+		CCNA_03246	0.88	+0.3
3,413,311	-		CCNA_03246	0.88	-0.8
3,413,311	-		CCNA_03246	0.88	-0.5
3,413,331	+				+0.2
3,413,339	-				+0.1
3,413,392	+				-2.1
3,413,392	+				-0.0
3,413,392	+				-0.6
3,413,394	+				-0.7
3,413,402	-				+0.0
3,413,416	+				-0.4
3,413,466	-				+0.8
3,413,490	-				+0.8
3,413,500	-				-0.3
3,413,559	+				-2.0
3,413,559	+				+0.8
3,413,559	+				-1.1
3,413,559	+				-1.2
3,413,565	-				-0.2
3,413,565	-				+1.6
3,413,567	-				-1.1
3,413,567	-				-1.7
3,413,567	-				+1.8
3,413,637	+				-0.4
3,413,656	+				+1.6
3,413,656	+				+1.0
3,413,658	+				+0.3
3,413,688	+				+1.0
3,413,727	+				+0.4
3,413,727	+				+0.3
3,413,758	-				-0.4
3,413,764	+				-0.2
3,413,764	+				+1.7
3,413,774	+				+0.2
3,413,879	-				+0.8
3,413,899	+				+0.9
3,413,913	+				-0.5
3,413,918	+				+1.3
3,413,921	-				-2.1
3,413,947	+		CCNA_03247	0.10	+0.1
3,413,972	+		CCNA_03247	0.12	+0.3
3,414,006	+		CCNA_03247	0.13	+0.7
3,414,016	-		CCNA_03247	0.14	+1.1
3,414,016	-		CCNA_03247	0.14	-0.3
3,414,028	+		CCNA_03247	0.15	+1.1
3,414,097	-		CCNA_03247	0.18	-1.2
3,414,138	+		CCNA_03247	0.21	+2.4
3,414,146	-		CCNA_03247	0.21	-2.9
3,414,164	+		CCNA_03247	0.22	+1.1
3,414,164	+		CCNA_03247	0.22	+0.5
3,414,164	+		CCNA_03247	0.22	+0.6
3,414,164	+		CCNA_03247	0.22	+0.8
3,414,164	+		CCNA_03247	0.22	+1.8
3,414,164	+		CCNA_03247	0.22	+0.3
3,414,164	+		CCNA_03247	0.22	+0.8
3,414,164	+		CCNA_03247	0.22	-0.2
3,414,172	-		CCNA_03247	0.22	-1.4
3,414,172	-		CCNA_03247	0.22	-1.3
3,414,172	-		CCNA_03247	0.22	-1.3
3,414,172	-		CCNA_03247	0.22	-0.6
3,414,172	-		CCNA_03247	0.22	-0.2
3,414,172	-		CCNA_03247	0.22	+0.3
3,414,172	-		CCNA_03247	0.22	-2.1
3,414,172	-		CCNA_03247	0.22	-0.8
3,414,172	-		CCNA_03247	0.22	-0.8
3,414,172	-		CCNA_03247	0.22	+0.1
3,414,172	-		CCNA_03247	0.22	-2.1
3,414,179	+		CCNA_03247	0.23	+0.7
3,414,179	+		CCNA_03247	0.23	+1.4
3,414,179	+		CCNA_03247	0.23	+0.1
3,414,222	+		CCNA_03247	0.25	+1.1
3,414,222	+		CCNA_03247	0.25	+0.4
3,414,222	+		CCNA_03247	0.25	+0.7
3,414,227	+		CCNA_03247	0.25	+0.6
3,414,227	+		CCNA_03247	0.25	+0.3
3,414,235	+		CCNA_03247	0.26	+0.4
3,414,239	+		CCNA_03247	0.26	+0.6
3,414,240	-		CCNA_03247	0.26	-1.2
3,414,272	+		CCNA_03247	0.28	+1.0
3,414,272	+		CCNA_03247	0.28	+0.7
3,414,285	+		CCNA_03247	0.29	+0.5
3,414,285	+		CCNA_03247	0.29	-0.1
3,414,285	+		CCNA_03247	0.29	+0.6
3,414,285	+		CCNA_03247	0.29	+0.8
3,414,285	+		CCNA_03247	0.29	+0.8
3,414,293	-		CCNA_03247	0.29	+1.3
3,414,293	-		CCNA_03247	0.29	-0.1
3,414,300	+		CCNA_03247	0.29	+1.1
3,414,300	+		CCNA_03247	0.29	-0.4
3,414,333	+		CCNA_03247	0.31	+2.2
3,414,341	-		CCNA_03247	0.32	+0.2
3,414,341	-		CCNA_03247	0.32	+0.1
3,414,349	+		CCNA_03247	0.32	+0.6
3,414,354	+		CCNA_03247	0.32	+1.2
3,414,359	+		CCNA_03247	0.33	-0.3
3,414,372	-		CCNA_03247	0.33	-1.9
3,414,372	-		CCNA_03247	0.33	-0.3