Experiment: PYE with Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00777 and CCNA_00778 are separated by 159 nucleotides CCNA_00778 and CCNA_00779 are separated by 566 nucleotides CCNA_00779 and CCNA_00780 are separated by 13 nucleotides
CCNA_00777: CCNA_00777 - PAS family GGDEF/EAL protein, at 835,363 to 837,786
_00777
CCNA_00778: CCNA_00778 - GTP-binding protein TypA/BipA, at 837,946 to 839,778
_00778
CCNA_00779: CCNA_00779 - TonB superfamily protein, at 840,345 to 840,746
_00779
CCNA_00780: CCNA_00780 - N-formylglutamate deformylase, at 840,760 to 841,686
_00780
Position (kb) 837
838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 836.955 kb on + strand, within CCNA_00777 at 836.955 kb on + strand, within CCNA_00777 at 836.963 kb on - strand, within CCNA_00777 at 836.978 kb on - strand, within CCNA_00777 at 837.022 kb on + strand, within CCNA_00777 at 837.054 kb on + strand, within CCNA_00777 at 837.093 kb on + strand at 837.137 kb on + strand, within CCNA_00777 at 837.152 kb on + strand, within CCNA_00777 at 837.184 kb on - strand, within CCNA_00777 at 837.192 kb on - strand, within CCNA_00777 at 837.213 kb on - strand, within CCNA_00777 at 837.276 kb on - strand, within CCNA_00777 at 837.329 kb on - strand, within CCNA_00777 at 837.388 kb on - strand, within CCNA_00777 at 837.393 kb on - strand, within CCNA_00777 at 837.393 kb on - strand, within CCNA_00777 at 837.397 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.458 kb on + strand, within CCNA_00777 at 837.505 kb on + strand, within CCNA_00777 at 837.510 kb on + strand, within CCNA_00777 at 837.513 kb on - strand, within CCNA_00777 at 837.516 kb on + strand, within CCNA_00777 at 837.520 kb on - strand, within CCNA_00777 at 837.524 kb on - strand, within CCNA_00777 at 837.553 kb on + strand at 837.566 kb on - strand at 837.595 kb on + strand at 837.615 kb on + strand at 837.615 kb on + strand at 837.643 kb on + strand at 837.670 kb on + strand at 837.684 kb on - strand at 837.716 kb on + strand at 837.716 kb on - strand at 837.792 kb on + strand at 837.800 kb on - strand at 837.800 kb on - strand at 837.800 kb on - strand at 837.836 kb on + strand at 837.861 kb on - strand at 837.861 kb on - strand at 837.910 kb on + strand at 837.910 kb on + strand at 837.918 kb on - strand at 837.982 kb on + strand at 837.982 kb on + strand at 837.990 kb on - strand at 837.990 kb on - strand at 838.002 kb on + strand at 838.022 kb on + strand at 838.065 kb on - strand at 838.070 kb on - strand at 838.070 kb on - strand at 838.078 kb on - strand at 838.113 kb on - strand at 838.158 kb on + strand, within CCNA_00778 at 838.245 kb on + strand, within CCNA_00778 at 838.245 kb on + strand, within CCNA_00778 at 838.245 kb on + strand, within CCNA_00778 at 838.252 kb on + strand, within CCNA_00778 at 838.252 kb on + strand, within CCNA_00778 at 838.253 kb on - strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.312 kb on - strand, within CCNA_00778 at 838.312 kb on - strand, within CCNA_00778 at 838.312 kb on - strand, within CCNA_00778 at 838.368 kb on - strand, within CCNA_00778 at 838.370 kb on + strand at 838.432 kb on + strand, within CCNA_00778 at 838.455 kb on - strand, within CCNA_00778 at 838.455 kb on - strand, within CCNA_00778 at 838.477 kb on - strand, within CCNA_00778 at 838.546 kb on + strand, within CCNA_00778 at 838.597 kb on - strand, within CCNA_00778 at 838.631 kb on - strand, within CCNA_00778 at 838.631 kb on - strand, within CCNA_00778 at 838.746 kb on - strand, within CCNA_00778 at 838.786 kb on + strand, within CCNA_00778 at 838.790 kb on - strand, within CCNA_00778 at 838.816 kb on + strand, within CCNA_00778 at 838.824 kb on - strand, within CCNA_00778 at 838.872 kb on - strand, within CCNA_00778 at 838.895 kb on - strand, within CCNA_00778 at 838.899 kb on + strand, within CCNA_00778 at 838.924 kb on - strand, within CCNA_00778 at 838.996 kb on + strand, within CCNA_00778 at 838.996 kb on + strand, within CCNA_00778 at 839.051 kb on + strand, within CCNA_00778 at 839.052 kb on - strand, within CCNA_00778 at 839.052 kb on - strand, within CCNA_00778 at 839.052 kb on - strand, within CCNA_00778 at 839.052 kb on - strand, within CCNA_00778 at 839.083 kb on - strand, within CCNA_00778 at 839.126 kb on + strand, within CCNA_00778 at 839.226 kb on + strand, within CCNA_00778 at 839.252 kb on + strand, within CCNA_00778 at 839.255 kb on - strand, within CCNA_00778 at 839.255 kb on - strand, within CCNA_00778 at 839.279 kb on + strand, within CCNA_00778 at 839.287 kb on - strand, within CCNA_00778 at 839.287 kb on - strand, within CCNA_00778 at 839.287 kb on - strand, within CCNA_00778 at 839.296 kb on + strand, within CCNA_00778 at 839.312 kb on - strand, within CCNA_00778 at 839.324 kb on + strand, within CCNA_00778 at 839.359 kb on + strand, within CCNA_00778 at 839.367 kb on - strand, within CCNA_00778 at 839.434 kb on - strand, within CCNA_00778 at 839.434 kb on - strand, within CCNA_00778 at 839.449 kb on - strand, within CCNA_00778 at 839.449 kb on - strand, within CCNA_00778 at 839.449 kb on - strand, within CCNA_00778 at 839.499 kb on - strand, within CCNA_00778 at 839.585 kb on + strand, within CCNA_00778 at 839.596 kb on - strand at 839.596 kb on - strand at 839.629 kb on - strand at 839.677 kb on - strand at 839.693 kb on + strand at 839.724 kb on - strand at 839.802 kb on + strand at 839.810 kb on - strand at 839.817 kb on - strand at 839.832 kb on - strand at 839.884 kb on - strand at 840.100 kb on - strand at 840.244 kb on + strand at 840.244 kb on + strand at 840.250 kb on - strand at 840.262 kb on + strand at 840.271 kb on + strand at 840.319 kb on - strand at 840.350 kb on - strand at 840.385 kb on + strand at 840.385 kb on + strand at 840.393 kb on - strand, within CCNA_00779 at 840.393 kb on - strand, within CCNA_00779 at 840.395 kb on + strand, within CCNA_00779 at 840.403 kb on - strand, within CCNA_00779 at 840.450 kb on + strand, within CCNA_00779 at 840.452 kb on + strand, within CCNA_00779 at 840.466 kb on + strand, within CCNA_00779 at 840.474 kb on - strand, within CCNA_00779 at 840.488 kb on + strand, within CCNA_00779 at 840.515 kb on + strand, within CCNA_00779 at 840.523 kb on - strand, within CCNA_00779 at 840.536 kb on + strand, within CCNA_00779 at 840.556 kb on + strand, within CCNA_00779 at 840.600 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.601 kb on + strand, within CCNA_00779 at 840.609 kb on - strand, within CCNA_00779 at 840.609 kb on - strand, within CCNA_00779 at 840.609 kb on - strand, within CCNA_00779 at 840.616 kb on + strand, within CCNA_00779 at 840.621 kb on + strand, within CCNA_00779 at 840.621 kb on + strand, within CCNA_00779 at 840.621 kb on + strand, within CCNA_00779 at 840.629 kb on - strand, within CCNA_00779 at 840.629 kb on - strand, within CCNA_00779 at 840.637 kb on + strand, within CCNA_00779 at 840.657 kb on + strand, within CCNA_00779 at 840.670 kb on - strand, within CCNA_00779 at 840.761 kb on - strand at 840.763 kb on + strand at 840.771 kb on - strand at 840.772 kb on + strand at 840.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chloramphenicol 0.0001 mg/ml remove 836,955 + CCNA_00777 0.66 +1.1 836,955 + CCNA_00777 0.66 +0.7 836,963 - CCNA_00777 0.66 +1.9 836,978 - CCNA_00777 0.67 +0.6 837,022 + CCNA_00777 0.68 -0.2 837,054 + CCNA_00777 0.70 +0.5 837,093 + +0.7 837,137 + CCNA_00777 0.73 -1.9 837,152 + CCNA_00777 0.74 -0.2 837,184 - CCNA_00777 0.75 -0.6 837,192 - CCNA_00777 0.75 +0.9 837,213 - CCNA_00777 0.76 +0.9 837,276 - CCNA_00777 0.79 +0.7 837,329 - CCNA_00777 0.81 +1.3 837,388 - CCNA_00777 0.84 -0.1 837,393 - CCNA_00777 0.84 -1.2 837,393 - CCNA_00777 0.84 -0.9 837,397 + CCNA_00777 0.84 -3.0 837,422 + CCNA_00777 0.85 +1.0 837,422 + CCNA_00777 0.85 +0.2 837,422 + CCNA_00777 0.85 +0.2 837,422 + CCNA_00777 0.85 +0.7 837,422 + CCNA_00777 0.85 -0.5 837,422 + CCNA_00777 0.85 -1.1 837,422 + CCNA_00777 0.85 -1.2 837,422 + CCNA_00777 0.85 -0.0 837,430 - CCNA_00777 0.85 -0.2 837,430 - CCNA_00777 0.85 +0.3 837,430 - CCNA_00777 0.85 +1.5 837,430 - CCNA_00777 0.85 -0.8 837,430 - CCNA_00777 0.85 +1.7 837,430 - CCNA_00777 0.85 +0.6 837,430 - CCNA_00777 0.85 +1.1 837,430 - CCNA_00777 0.85 +1.2 837,430 - CCNA_00777 0.85 +1.2 837,430 - CCNA_00777 0.85 +0.5 837,430 - CCNA_00777 0.85 +0.7 837,430 - CCNA_00777 0.85 -0.2 837,458 + CCNA_00777 0.86 -0.4 837,505 + CCNA_00777 0.88 +1.1 837,510 + CCNA_00777 0.89 -1.3 837,513 - CCNA_00777 0.89 +0.5 837,516 + CCNA_00777 0.89 -0.3 837,520 - CCNA_00777 0.89 +0.6 837,524 - CCNA_00777 0.89 +0.9 837,553 + +1.3 837,566 - -0.9 837,595 + +0.7 837,615 + -0.9 837,615 + +0.4 837,643 + +0.8 837,670 + -1.3 837,684 - +0.2 837,716 + -2.0 837,716 - +1.0 837,792 + +0.6 837,800 - +0.5 837,800 - -0.4 837,800 - +0.2 837,836 + -1.6 837,861 - -1.4 837,861 - -0.9 837,910 + -1.6 837,910 + +0.1 837,918 - +1.6 837,982 + -0.2 837,982 + +0.3 837,990 - -0.0 837,990 - -0.8 838,002 + -0.2 838,022 + +0.1 838,065 - -0.1 838,070 - -0.3 838,070 - +1.0 838,078 - -0.1 838,113 - -0.6 838,158 + CCNA_00778 0.12 -1.0 838,245 + CCNA_00778 0.16 -2.5 838,245 + CCNA_00778 0.16 -0.4 838,245 + CCNA_00778 0.16 -0.3 838,252 + CCNA_00778 0.17 +0.1 838,252 + CCNA_00778 0.17 -1.4 838,253 - CCNA_00778 0.17 -2.2 838,304 + CCNA_00778 0.20 +1.0 838,304 + CCNA_00778 0.20 +0.5 838,304 + CCNA_00778 0.20 -1.1 838,304 + CCNA_00778 0.20 -0.7 838,312 - CCNA_00778 0.20 -0.2 838,312 - CCNA_00778 0.20 +0.2 838,312 - CCNA_00778 0.20 -0.6 838,368 - CCNA_00778 0.23 -0.5 838,370 + +0.5 838,432 + CCNA_00778 0.27 -1.0 838,455 - CCNA_00778 0.28 -0.8 838,455 - CCNA_00778 0.28 +0.4 838,477 - CCNA_00778 0.29 -0.3 838,546 + CCNA_00778 0.33 -0.7 838,597 - CCNA_00778 0.36 +0.1 838,631 - CCNA_00778 0.37 -1.3 838,631 - CCNA_00778 0.37 -0.3 838,746 - CCNA_00778 0.44 -1.2 838,786 + CCNA_00778 0.46 -1.0 838,790 - CCNA_00778 0.46 -0.3 838,816 + CCNA_00778 0.47 -0.7 838,824 - CCNA_00778 0.48 -0.7 838,872 - CCNA_00778 0.51 -1.5 838,895 - CCNA_00778 0.52 +0.9 838,899 + CCNA_00778 0.52 +0.7 838,924 - CCNA_00778 0.53 -1.2 838,996 + CCNA_00778 0.57 -0.0 838,996 + CCNA_00778 0.57 +2.0 839,051 + CCNA_00778 0.60 -0.9 839,052 - CCNA_00778 0.60 -0.7 839,052 - CCNA_00778 0.60 -0.2 839,052 - CCNA_00778 0.60 -0.6 839,052 - CCNA_00778 0.60 -1.3 839,083 - CCNA_00778 0.62 -1.0 839,126 + CCNA_00778 0.64 -0.2 839,226 + CCNA_00778 0.70 -2.8 839,252 + CCNA_00778 0.71 +0.7 839,255 - CCNA_00778 0.71 -0.8 839,255 - CCNA_00778 0.71 +0.1 839,279 + CCNA_00778 0.73 +1.6 839,287 - CCNA_00778 0.73 -2.7 839,287 - CCNA_00778 0.73 -1.2 839,287 - CCNA_00778 0.73 +0.1 839,296 + CCNA_00778 0.74 +0.1 839,312 - CCNA_00778 0.75 -0.4 839,324 + CCNA_00778 0.75 -0.8 839,359 + CCNA_00778 0.77 +0.1 839,367 - CCNA_00778 0.78 -1.3 839,434 - CCNA_00778 0.81 -0.2 839,434 - CCNA_00778 0.81 -0.8 839,449 - CCNA_00778 0.82 -2.8 839,449 - CCNA_00778 0.82 -0.9 839,449 - CCNA_00778 0.82 -0.4 839,499 - CCNA_00778 0.85 -0.6 839,585 + CCNA_00778 0.89 -0.6 839,596 - -0.3 839,596 - -1.5 839,629 - -1.1 839,677 - -0.5 839,693 + -0.6 839,724 - +0.4 839,802 + +0.7 839,810 - -0.7 839,817 - +0.4 839,832 - +0.1 839,884 - +0.5 840,100 - -0.7 840,244 + +0.2 840,244 + +1.3 840,250 - -0.2 840,262 + -0.6 840,271 + -1.0 840,319 - -0.6 840,350 - +0.1 840,385 + +0.6 840,385 + +0.7 840,393 - CCNA_00779 0.12 -0.9 840,393 - CCNA_00779 0.12 -0.6 840,395 + CCNA_00779 0.12 +1.7 840,403 - CCNA_00779 0.14 -0.5 840,450 + CCNA_00779 0.26 +0.7 840,452 + CCNA_00779 0.27 +0.8 840,466 + CCNA_00779 0.30 +0.3 840,474 - CCNA_00779 0.32 +0.6 840,488 + CCNA_00779 0.36 +0.7 840,515 + CCNA_00779 0.42 -0.1 840,523 - CCNA_00779 0.44 +0.1 840,536 + CCNA_00779 0.48 -0.9 840,556 + CCNA_00779 0.52 -0.0 840,600 + CCNA_00779 0.63 -0.9 840,601 + CCNA_00779 0.64 -0.0 840,601 + CCNA_00779 0.64 +0.3 840,601 + CCNA_00779 0.64 -0.3 840,601 + CCNA_00779 0.64 -0.9 840,609 - CCNA_00779 0.66 -0.1 840,609 - CCNA_00779 0.66 -1.2 840,609 - CCNA_00779 0.66 -1.4 840,616 + CCNA_00779 0.67 -0.5 840,621 + CCNA_00779 0.69 -0.3 840,621 + CCNA_00779 0.69 -0.5 840,621 + CCNA_00779 0.69 -0.5 840,629 - CCNA_00779 0.71 -0.4 840,629 - CCNA_00779 0.71 +0.5 840,637 + CCNA_00779 0.73 +0.6 840,657 + CCNA_00779 0.78 +0.1 840,670 - CCNA_00779 0.81 +1.1 840,761 - +0.8 840,763 + -0.5 840,771 - +0.3 840,772 + -0.1 840,777 + -0.2
Or see this region's nucleotide sequence