Experiment: PYE with Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00754 and CCNA_00755 are separated by 147 nucleotides CCNA_00755 and CCNA_00756 overlap by 43 nucleotides CCNA_00756 and CCNA_00757 are separated by 135 nucleotides CCNA_00757 and CCNA_00758 are separated by 120 nucleotides CCNA_00758 and CCNA_00759 are separated by 199 nucleotides
CCNA_00754: CCNA_00754 - Nodulin-21 / CCC1-related protein, at 812,595 to 813,296
_00754
CCNA_00755: CCNA_00755 - tellurium resistance protein terB, at 813,444 to 813,884
_00755
CCNA_00756: CCNA_00756 - hypothetical protein, at 813,842 to 814,120
_00756
CCNA_00757: CCNA_00757 - lysyl-tRNA synthetase, at 814,256 to 815,314
_00757
CCNA_00758: CCNA_00758 - translation elongation factor P EF-P, at 815,435 to 816,001
_00758
CCNA_00759: CCNA_00759 - TonB-dependent receptor, at 816,201 to 818,675
_00759
Position (kb) 814
815
816 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 813.281 kb on + strand at 813.291 kb on + strand at 813.291 kb on + strand at 813.300 kb on - strand at 813.313 kb on - strand at 813.317 kb on - strand at 813.320 kb on + strand at 813.320 kb on + strand at 813.320 kb on + strand at 813.328 kb on - strand at 813.333 kb on - strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.366 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.386 kb on + strand at 813.427 kb on + strand at 813.442 kb on + strand at 813.450 kb on - strand at 813.450 kb on - strand at 813.452 kb on + strand at 813.464 kb on + strand at 813.470 kb on + strand at 813.484 kb on - strand at 813.497 kb on - strand, within CCNA_00755 at 813.549 kb on + strand, within CCNA_00755 at 813.549 kb on + strand, within CCNA_00755 at 813.557 kb on - strand, within CCNA_00755 at 813.562 kb on + strand, within CCNA_00755 at 813.562 kb on - strand, within CCNA_00755 at 813.569 kb on + strand, within CCNA_00755 at 813.602 kb on + strand, within CCNA_00755 at 813.610 kb on - strand, within CCNA_00755 at 813.621 kb on - strand, within CCNA_00755 at 813.621 kb on - strand, within CCNA_00755 at 813.621 kb on - strand, within CCNA_00755 at 813.621 kb on - strand, within CCNA_00755 at 813.626 kb on - strand, within CCNA_00755 at 813.678 kb on + strand, within CCNA_00755 at 813.678 kb on + strand, within CCNA_00755 at 813.686 kb on - strand, within CCNA_00755 at 813.686 kb on - strand, within CCNA_00755 at 813.686 kb on - strand, within CCNA_00755 at 813.691 kb on + strand, within CCNA_00755 at 813.693 kb on + strand, within CCNA_00755 at 813.693 kb on + strand, within CCNA_00755 at 813.710 kb on - strand, within CCNA_00755 at 813.866 kb on - strand at 813.866 kb on - strand at 813.866 kb on - strand at 813.866 kb on - strand at 813.879 kb on + strand at 813.884 kb on + strand at 813.913 kb on + strand, within CCNA_00756 at 813.916 kb on - strand, within CCNA_00756 at 814.011 kb on - strand, within CCNA_00756 at 814.013 kb on + strand, within CCNA_00756 at 814.044 kb on - strand, within CCNA_00756 at 814.044 kb on - strand, within CCNA_00756 at 814.044 kb on - strand, within CCNA_00756 at 814.044 kb on - strand, within CCNA_00756 at 814.074 kb on + strand, within CCNA_00756 at 814.126 kb on - strand at 814.146 kb on + strand at 814.148 kb on - strand at 814.164 kb on + strand at 814.164 kb on + strand at 814.172 kb on - strand at 814.172 kb on - strand at 814.181 kb on - strand at 814.212 kb on + strand at 814.253 kb on + strand at 814.259 kb on - strand at 814.259 kb on - strand at 814.325 kb on + strand at 814.331 kb on + strand at 814.331 kb on + strand at 814.331 kb on + strand at 814.339 kb on - strand at 814.339 kb on - strand at 814.339 kb on - strand at 814.374 kb on + strand, within CCNA_00757 at 814.374 kb on + strand, within CCNA_00757 at 814.415 kb on - strand, within CCNA_00757 at 814.421 kb on - strand, within CCNA_00757 at 814.493 kb on - strand, within CCNA_00757 at 814.495 kb on + strand, within CCNA_00757 at 814.498 kb on - strand, within CCNA_00757 at 814.498 kb on - strand, within CCNA_00757 at 814.503 kb on - strand, within CCNA_00757 at 814.503 kb on - strand, within CCNA_00757 at 814.503 kb on - strand, within CCNA_00757 at 814.508 kb on + strand, within CCNA_00757 at 814.516 kb on + strand, within CCNA_00757 at 814.523 kb on + strand, within CCNA_00757 at 814.530 kb on + strand, within CCNA_00757 at 814.559 kb on + strand, within CCNA_00757 at 814.559 kb on + strand, within CCNA_00757 at 814.559 kb on + strand, within CCNA_00757 at 814.559 kb on + strand, within CCNA_00757 at 814.559 kb on + strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.567 kb on - strand, within CCNA_00757 at 814.602 kb on - strand, within CCNA_00757 at 814.624 kb on + strand, within CCNA_00757 at 814.631 kb on - strand, within CCNA_00757 at 814.739 kb on - strand, within CCNA_00757 at 814.825 kb on + strand, within CCNA_00757 at 814.833 kb on - strand, within CCNA_00757 at 814.943 kb on + strand, within CCNA_00757 at 814.945 kb on + strand, within CCNA_00757 at 814.951 kb on - strand, within CCNA_00757 at 814.970 kb on - strand, within CCNA_00757 at 814.992 kb on + strand, within CCNA_00757 at 814.998 kb on + strand, within CCNA_00757 at 814.998 kb on + strand, within CCNA_00757 at 814.999 kb on - strand, within CCNA_00757 at 815.000 kb on - strand, within CCNA_00757 at 815.006 kb on - strand, within CCNA_00757 at 815.021 kb on + strand, within CCNA_00757 at 815.074 kb on + strand, within CCNA_00757 at 815.074 kb on - strand, within CCNA_00757 at 815.082 kb on + strand, within CCNA_00757 at 815.090 kb on - strand, within CCNA_00757 at 815.102 kb on + strand, within CCNA_00757 at 815.102 kb on + strand, within CCNA_00757 at 815.134 kb on - strand, within CCNA_00757 at 815.139 kb on + strand, within CCNA_00757 at 815.177 kb on - strand, within CCNA_00757 at 815.194 kb on + strand, within CCNA_00757 at 815.194 kb on - strand, within CCNA_00757 at 815.194 kb on - strand, within CCNA_00757 at 815.194 kb on - strand, within CCNA_00757 at 815.202 kb on - strand, within CCNA_00757 at 815.202 kb on - strand, within CCNA_00757 at 815.259 kb on + strand at 815.298 kb on + strand at 815.301 kb on - strand at 815.309 kb on + strand at 815.312 kb on - strand at 815.322 kb on + strand at 815.372 kb on + strand at 815.374 kb on + strand at 815.380 kb on - strand at 815.415 kb on + strand at 815.415 kb on + strand at 815.425 kb on + strand at 815.577 kb on + strand, within CCNA_00758 at 815.995 kb on + strand at 815.995 kb on + strand at 815.995 kb on + strand at 815.995 kb on + strand at 815.995 kb on + strand at 815.995 kb on + strand at 816.022 kb on + strand at 816.022 kb on + strand at 816.022 kb on + strand at 816.106 kb on + strand at 816.119 kb on + strand at 816.190 kb on + strand at 816.198 kb on - strand at 816.198 kb on - strand at 816.199 kb on + strand at 816.199 kb on + strand at 816.289 kb on + strand at 816.314 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chloramphenicol 0.0001 mg/ml remove 813,281 + +0.7 813,291 + -1.0 813,291 + -0.8 813,300 - +1.0 813,313 - -1.5 813,317 - +0.6 813,320 + -0.8 813,320 + +0.4 813,320 + +0.2 813,328 - -0.8 813,333 - +1.0 813,344 + +0.1 813,344 + +0.3 813,344 + -0.2 813,344 + +1.0 813,344 + +1.0 813,344 + -0.3 813,344 + -0.5 813,344 + +0.6 813,344 + +1.0 813,344 + -0.0 813,344 + +0.1 813,344 + +0.7 813,352 - +1.2 813,352 - +1.6 813,352 - -1.0 813,352 - +0.1 813,352 - +0.6 813,352 - +0.7 813,352 - -0.3 813,352 - +0.4 813,366 + +0.1 813,373 + +2.7 813,373 + +0.6 813,373 + -0.4 813,373 + +1.6 813,373 + +2.2 813,373 + +0.3 813,373 + -1.3 813,373 + +0.7 813,373 + -0.8 813,373 + +0.6 813,373 + -0.2 813,373 + +0.8 813,373 + -0.2 813,373 + +0.8 813,373 + +1.5 813,373 + +0.5 813,373 + -0.7 813,381 - -0.1 813,381 - -0.8 813,381 - +0.0 813,381 - -0.7 813,381 - -0.1 813,381 - -1.3 813,381 - -0.6 813,381 - +0.7 813,381 - +0.3 813,381 - -0.5 813,381 - +1.3 813,381 - +0.1 813,381 - +0.7 813,381 - +0.3 813,386 + -1.3 813,427 + -0.5 813,442 + -1.1 813,450 - +1.2 813,450 - +0.5 813,452 + +1.5 813,464 + -1.1 813,470 + -0.4 813,484 - +0.1 813,497 - CCNA_00755 0.12 -1.7 813,549 + CCNA_00755 0.24 -1.5 813,549 + CCNA_00755 0.24 -1.1 813,557 - CCNA_00755 0.26 -1.5 813,562 + CCNA_00755 0.27 -2.0 813,562 - CCNA_00755 0.27 +1.3 813,569 + CCNA_00755 0.28 +1.0 813,602 + CCNA_00755 0.36 -0.8 813,610 - CCNA_00755 0.38 -2.3 813,621 - CCNA_00755 0.40 -1.2 813,621 - CCNA_00755 0.40 -0.6 813,621 - CCNA_00755 0.40 -0.0 813,621 - CCNA_00755 0.40 -0.8 813,626 - CCNA_00755 0.41 -0.9 813,678 + CCNA_00755 0.53 +1.2 813,678 + CCNA_00755 0.53 -1.2 813,686 - CCNA_00755 0.55 -1.4 813,686 - CCNA_00755 0.55 -0.2 813,686 - CCNA_00755 0.55 -0.9 813,691 + CCNA_00755 0.56 -0.6 813,693 + CCNA_00755 0.56 +4.3 813,693 + CCNA_00755 0.56 +0.1 813,710 - CCNA_00755 0.60 +1.0 813,866 - +0.5 813,866 - -0.8 813,866 - +1.2 813,866 - -0.8 813,879 + -0.8 813,884 + -1.0 813,913 + CCNA_00756 0.25 +0.7 813,916 - CCNA_00756 0.27 -0.3 814,011 - CCNA_00756 0.61 +0.8 814,013 + CCNA_00756 0.61 -0.1 814,044 - CCNA_00756 0.72 +2.4 814,044 - CCNA_00756 0.72 +2.2 814,044 - CCNA_00756 0.72 +2.1 814,044 - CCNA_00756 0.72 +2.7 814,074 + CCNA_00756 0.83 +0.5 814,126 - +1.6 814,146 + +1.3 814,148 - +1.5 814,164 + -1.0 814,164 + -0.3 814,172 - +2.0 814,172 - +2.1 814,181 - +2.0 814,212 + -0.3 814,253 + +0.0 814,259 - -1.3 814,259 - +0.5 814,325 + -0.6 814,331 + +1.7 814,331 + +0.0 814,331 + -0.8 814,339 - -0.7 814,339 - +1.3 814,339 - -1.3 814,374 + CCNA_00757 0.11 +0.0 814,374 + CCNA_00757 0.11 -1.5 814,415 - CCNA_00757 0.15 +1.3 814,421 - CCNA_00757 0.16 +0.1 814,493 - CCNA_00757 0.22 +0.0 814,495 + CCNA_00757 0.23 +0.4 814,498 - CCNA_00757 0.23 -1.1 814,498 - CCNA_00757 0.23 -1.8 814,503 - CCNA_00757 0.23 -1.3 814,503 - CCNA_00757 0.23 +0.5 814,503 - CCNA_00757 0.23 -0.5 814,508 + CCNA_00757 0.24 +0.3 814,516 + CCNA_00757 0.25 -0.6 814,523 + CCNA_00757 0.25 +1.3 814,530 + CCNA_00757 0.26 -0.9 814,559 + CCNA_00757 0.29 -1.7 814,559 + CCNA_00757 0.29 -0.1 814,559 + CCNA_00757 0.29 -0.1 814,559 + CCNA_00757 0.29 +0.3 814,559 + CCNA_00757 0.29 -0.6 814,567 - CCNA_00757 0.29 +1.1 814,567 - CCNA_00757 0.29 -2.7 814,567 - CCNA_00757 0.29 -0.3 814,567 - CCNA_00757 0.29 -0.6 814,567 - CCNA_00757 0.29 +0.1 814,567 - CCNA_00757 0.29 -0.7 814,567 - CCNA_00757 0.29 -0.7 814,567 - CCNA_00757 0.29 +0.7 814,567 - CCNA_00757 0.29 -1.5 814,567 - CCNA_00757 0.29 +0.5 814,567 - CCNA_00757 0.29 -0.4 814,602 - CCNA_00757 0.33 -1.0 814,624 + CCNA_00757 0.35 -1.9 814,631 - CCNA_00757 0.35 +0.5 814,739 - CCNA_00757 0.46 +0.8 814,825 + CCNA_00757 0.54 +0.7 814,833 - CCNA_00757 0.54 +0.2 814,943 + CCNA_00757 0.65 -0.4 814,945 + CCNA_00757 0.65 +0.2 814,951 - CCNA_00757 0.66 -2.5 814,970 - CCNA_00757 0.67 +0.2 814,992 + CCNA_00757 0.69 -1.0 814,998 + CCNA_00757 0.70 -1.1 814,998 + CCNA_00757 0.70 -0.8 814,999 - CCNA_00757 0.70 -0.6 815,000 - CCNA_00757 0.70 -0.1 815,006 - CCNA_00757 0.71 +0.3 815,021 + CCNA_00757 0.72 -1.3 815,074 + CCNA_00757 0.77 -0.8 815,074 - CCNA_00757 0.77 -1.6 815,082 + CCNA_00757 0.78 +0.1 815,090 - CCNA_00757 0.79 -0.8 815,102 + CCNA_00757 0.80 +0.3 815,102 + CCNA_00757 0.80 -0.8 815,134 - CCNA_00757 0.83 -0.5 815,139 + CCNA_00757 0.83 +0.2 815,177 - CCNA_00757 0.87 -1.0 815,194 + CCNA_00757 0.89 -1.8 815,194 - CCNA_00757 0.89 +0.7 815,194 - CCNA_00757 0.89 -1.2 815,194 - CCNA_00757 0.89 -0.8 815,202 - CCNA_00757 0.89 -1.6 815,202 - CCNA_00757 0.89 -0.9 815,259 + +1.0 815,298 + -0.6 815,301 - +0.0 815,309 + +0.2 815,312 - +0.7 815,322 + -0.3 815,372 + +1.2 815,374 + +0.9 815,380 - -1.7 815,415 + +2.7 815,415 + +1.2 815,425 + +0.6 815,577 + CCNA_00758 0.25 +1.7 815,995 + +1.9 815,995 + +2.0 815,995 + +1.7 815,995 + +2.0 815,995 + +1.6 815,995 + +2.0 816,022 + +2.0 816,022 + +1.8 816,022 + +2.0 816,106 + +0.7 816,119 + +0.5 816,190 + -0.4 816,198 - +0.9 816,198 - +0.7 816,199 + -1.5 816,199 + -0.4 816,289 + -1.6 816,314 + -2.3
Or see this region's nucleotide sequence