Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00479

Experiment: PYE with Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00478 and CCNA_00479 are separated by 188 nucleotidesCCNA_00479 and CCNA_00480 are separated by 68 nucleotides CCNA_00478: CCNA_00478 - hypothetical protein, at 494,406 to 495,143 _00478 CCNA_00479: CCNA_00479 - Helix-turn-helix DNA-binding protein, at 495,332 to 495,655 _00479 CCNA_00480: CCNA_00480 - bacteriophage P4 integrase, at 495,724 to 497,022 _00480 Position (kb) 495 496Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 494.343 kb on - strandat 494.371 kb on + strandat 494.379 kb on - strandat 494.411 kb on - strandat 494.411 kb on - strandat 494.411 kb on - strandat 494.411 kb on - strandat 494.428 kb on + strandat 494.428 kb on + strandat 494.436 kb on - strandat 494.436 kb on - strandat 494.454 kb on + strandat 494.469 kb on - strandat 494.512 kb on - strand, within CCNA_00478at 494.567 kb on - strand, within CCNA_00478at 494.572 kb on + strand, within CCNA_00478at 494.573 kb on + strand, within CCNA_00478at 494.594 kb on + strand, within CCNA_00478at 494.602 kb on - strand, within CCNA_00478at 494.602 kb on - strand, within CCNA_00478at 494.603 kb on - strand, within CCNA_00478at 494.603 kb on - strand, within CCNA_00478at 494.613 kb on - strand, within CCNA_00478at 494.631 kb on + strand, within CCNA_00478at 494.790 kb on - strand, within CCNA_00478at 494.823 kb on - strand, within CCNA_00478at 494.862 kb on + strand, within CCNA_00478at 494.862 kb on + strand, within CCNA_00478at 494.862 kb on + strand, within CCNA_00478at 494.870 kb on - strand, within CCNA_00478at 494.870 kb on - strand, within CCNA_00478at 494.939 kb on + strand, within CCNA_00478at 494.982 kb on + strand, within CCNA_00478at 495.012 kb on + strand, within CCNA_00478at 495.061 kb on + strand, within CCNA_00478at 495.215 kb on + strandat 495.245 kb on + strandat 495.245 kb on + strandat 495.253 kb on - strandat 495.253 kb on - strandat 495.292 kb on + strandat 495.292 kb on + strandat 495.300 kb on - strandat 495.300 kb on - strandat 495.300 kb on - strandat 495.307 kb on + strandat 495.307 kb on + strandat 495.307 kb on + strandat 495.307 kb on + strandat 495.307 kb on + strandat 495.307 kb on + strandat 495.310 kb on - strandat 495.315 kb on - strandat 495.315 kb on - strandat 495.315 kb on - strandat 495.315 kb on - strandat 495.324 kb on - strandat 495.405 kb on + strand, within CCNA_00479at 495.420 kb on + strand, within CCNA_00479at 495.428 kb on - strand, within CCNA_00479at 495.428 kb on - strand, within CCNA_00479at 495.428 kb on - strand, within CCNA_00479at 495.430 kb on + strand, within CCNA_00479at 495.447 kb on + strand, within CCNA_00479at 495.448 kb on + strand, within CCNA_00479at 495.453 kb on + strand, within CCNA_00479at 495.456 kb on - strand, within CCNA_00479at 495.456 kb on - strand, within CCNA_00479at 495.503 kb on + strand, within CCNA_00479at 495.503 kb on + strand, within CCNA_00479at 495.503 kb on + strand, within CCNA_00479at 495.503 kb on + strand, within CCNA_00479at 495.503 kb on + strand, within CCNA_00479at 495.503 kb on + strand, within CCNA_00479at 495.503 kb on + strand, within CCNA_00479at 495.503 kb on + strand, within CCNA_00479at 495.503 kb on + strand, within CCNA_00479at 495.503 kb on + strand, within CCNA_00479at 495.511 kb on - strand, within CCNA_00479at 495.511 kb on - strand, within CCNA_00479at 495.511 kb on - strand, within CCNA_00479at 495.511 kb on - strand, within CCNA_00479at 495.511 kb on - strand, within CCNA_00479at 495.511 kb on - strand, within CCNA_00479at 495.511 kb on - strand, within CCNA_00479at 495.518 kb on - strand, within CCNA_00479at 495.518 kb on - strand, within CCNA_00479at 495.526 kb on + strand, within CCNA_00479at 495.526 kb on + strand, within CCNA_00479at 495.542 kb on - strand, within CCNA_00479at 495.561 kb on + strand, within CCNA_00479at 495.561 kb on + strand, within CCNA_00479at 495.569 kb on - strand, within CCNA_00479at 495.569 kb on - strand, within CCNA_00479at 495.569 kb on - strand, within CCNA_00479at 495.569 kb on - strand, within CCNA_00479at 495.593 kb on + strand, within CCNA_00479at 495.594 kb on + strand, within CCNA_00479at 495.594 kb on + strand, within CCNA_00479at 495.594 kb on + strand, within CCNA_00479at 495.622 kb on - strand, within CCNA_00479at 495.654 kb on + strandat 495.663 kb on + strandat 495.699 kb on - strandat 495.721 kb on + strandat 495.721 kb on + strandat 495.729 kb on - strandat 495.729 kb on - strandat 495.738 kb on - strandat 495.749 kb on + strandat 495.757 kb on - strandat 495.761 kb on + strandat 495.769 kb on - strandat 495.854 kb on + strand, within CCNA_00480at 495.908 kb on + strand, within CCNA_00480at 495.927 kb on - strand, within CCNA_00480at 495.933 kb on + strand, within CCNA_00480at 495.943 kb on + strand, within CCNA_00480at 495.951 kb on - strand, within CCNA_00480at 495.951 kb on - strand, within CCNA_00480at 495.959 kb on + strand, within CCNA_00480at 495.959 kb on + strand, within CCNA_00480at 495.959 kb on + strand, within CCNA_00480at 495.959 kb on + strand, within CCNA_00480at 495.967 kb on - strand, within CCNA_00480at 495.967 kb on - strand, within CCNA_00480at 495.967 kb on - strand, within CCNA_00480at 496.012 kb on + strand, within CCNA_00480at 496.020 kb on - strand, within CCNA_00480at 496.020 kb on - strand, within CCNA_00480at 496.122 kb on - strand, within CCNA_00480at 496.132 kb on - strand, within CCNA_00480at 496.157 kb on + strand, within CCNA_00480at 496.158 kb on + strand, within CCNA_00480at 496.165 kb on - strand, within CCNA_00480at 496.165 kb on - strand, within CCNA_00480at 496.181 kb on + strand, within CCNA_00480at 496.181 kb on + strand, within CCNA_00480at 496.189 kb on - strand, within CCNA_00480at 496.189 kb on - strand, within CCNA_00480at 496.189 kb on - strand, within CCNA_00480at 496.230 kb on + strand, within CCNA_00480at 496.249 kb on + strand, within CCNA_00480at 496.294 kb on + strand, within CCNA_00480at 496.302 kb on - strand, within CCNA_00480at 496.327 kb on + strand, within CCNA_00480at 496.328 kb on - strand, within CCNA_00480at 496.333 kb on + strand, within CCNA_00480at 496.333 kb on + strand, within CCNA_00480at 496.333 kb on + strand, within CCNA_00480at 496.333 kb on - strand, within CCNA_00480at 496.346 kb on - strand, within CCNA_00480at 496.372 kb on - strand, within CCNA_00480at 496.387 kb on + strand, within CCNA_00480at 496.417 kb on + strand, within CCNA_00480at 496.417 kb on + strand, within CCNA_00480at 496.425 kb on - strand, within CCNA_00480at 496.443 kb on + strand, within CCNA_00480at 496.453 kb on + strand, within CCNA_00480at 496.453 kb on + strand, within CCNA_00480at 496.453 kb on + strand, within CCNA_00480at 496.461 kb on - strand, within CCNA_00480at 496.461 kb on - strand, within CCNA_00480at 496.463 kb on + strand, within CCNA_00480at 496.463 kb on + strand, within CCNA_00480at 496.463 kb on + strand, within CCNA_00480at 496.471 kb on - strand, within CCNA_00480at 496.499 kb on + strand, within CCNA_00480at 496.501 kb on - strand, within CCNA_00480at 496.518 kb on + strand, within CCNA_00480at 496.529 kb on + strand, within CCNA_00480at 496.529 kb on + strand, within CCNA_00480at 496.537 kb on - strand, within CCNA_00480at 496.541 kb on - strand, within CCNA_00480at 496.554 kb on - strand, within CCNA_00480at 496.585 kb on + strand, within CCNA_00480at 496.588 kb on - strand, within CCNA_00480at 496.589 kb on - strand, within CCNA_00480at 496.593 kb on - strand, within CCNA_00480at 496.609 kb on + strand, within CCNA_00480at 496.617 kb on - strand, within CCNA_00480at 496.617 kb on - strand, within CCNA_00480at 496.631 kb on - strand, within CCNA_00480at 496.633 kb on + strand, within CCNA_00480

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloramphenicol 0.0001 mg/ml
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494,343 - -0.4
494,371 + -1.1
494,379 - -0.6
494,411 - -0.2
494,411 - -0.9
494,411 - -2.4
494,411 - -1.9
494,428 + +2.5
494,428 + -1.3
494,436 - -0.6
494,436 - -0.3
494,454 + +0.1
494,469 - -1.4
494,512 - CCNA_00478 0.14 -0.5
494,567 - CCNA_00478 0.22 +0.1
494,572 + CCNA_00478 0.22 -0.2
494,573 + CCNA_00478 0.23 -0.2
494,594 + CCNA_00478 0.25 +0.1
494,602 - CCNA_00478 0.27 +0.5
494,602 - CCNA_00478 0.27 -1.5
494,603 - CCNA_00478 0.27 -2.1
494,603 - CCNA_00478 0.27 +0.5
494,613 - CCNA_00478 0.28 -0.4
494,631 + CCNA_00478 0.30 -2.8
494,790 - CCNA_00478 0.52 -1.2
494,823 - CCNA_00478 0.57 -1.7
494,862 + CCNA_00478 0.62 +1.4
494,862 + CCNA_00478 0.62 -0.4
494,862 + CCNA_00478 0.62 -0.4
494,870 - CCNA_00478 0.63 -0.5
494,870 - CCNA_00478 0.63 -0.9
494,939 + CCNA_00478 0.72 -1.3
494,982 + CCNA_00478 0.78 -2.4
495,012 + CCNA_00478 0.82 -0.5
495,061 + CCNA_00478 0.89 -2.5
495,215 + -1.7
495,245 + -2.0
495,245 + -1.4
495,253 - -0.4
495,253 - +0.1
495,292 + -2.2
495,292 + -0.6
495,300 - +1.4
495,300 - -0.6
495,300 - +0.0
495,307 + -1.2
495,307 + -1.3
495,307 + -2.0
495,307 + -0.1
495,307 + +0.9
495,307 + -0.9
495,310 - -2.5
495,315 - +1.2
495,315 - +1.4
495,315 - -1.8
495,315 - -0.8
495,324 - -0.4
495,405 + CCNA_00479 0.23 -0.5
495,420 + CCNA_00479 0.27 -0.5
495,428 - CCNA_00479 0.30 -0.1
495,428 - CCNA_00479 0.30 +0.0
495,428 - CCNA_00479 0.30 +0.8
495,430 + CCNA_00479 0.30 -1.9
495,447 + CCNA_00479 0.35 -0.6
495,448 + CCNA_00479 0.36 -1.2
495,453 + CCNA_00479 0.37 -1.9
495,456 - CCNA_00479 0.38 -0.8
495,456 - CCNA_00479 0.38 -1.5
495,503 + CCNA_00479 0.53 +1.5
495,503 + CCNA_00479 0.53 +1.5
495,503 + CCNA_00479 0.53 -0.1
495,503 + CCNA_00479 0.53 +0.3
495,503 + CCNA_00479 0.53 -0.3
495,503 + CCNA_00479 0.53 -0.8
495,503 + CCNA_00479 0.53 +0.4
495,503 + CCNA_00479 0.53 -0.5
495,503 + CCNA_00479 0.53 -1.4
495,503 + CCNA_00479 0.53 -0.4
495,511 - CCNA_00479 0.55 -0.5
495,511 - CCNA_00479 0.55 -2.6
495,511 - CCNA_00479 0.55 -1.4
495,511 - CCNA_00479 0.55 +0.7
495,511 - CCNA_00479 0.55 -1.2
495,511 - CCNA_00479 0.55 -0.7
495,511 - CCNA_00479 0.55 -0.5
495,518 - CCNA_00479 0.57 +1.1
495,518 - CCNA_00479 0.57 -0.4
495,526 + CCNA_00479 0.60 -1.1
495,526 + CCNA_00479 0.60 -0.6
495,542 - CCNA_00479 0.65 -1.6
495,561 + CCNA_00479 0.71 -0.9
495,561 + CCNA_00479 0.71 -0.2
495,569 - CCNA_00479 0.73 -2.5
495,569 - CCNA_00479 0.73 +0.4
495,569 - CCNA_00479 0.73 +0.3
495,569 - CCNA_00479 0.73 -0.8
495,593 + CCNA_00479 0.81 +0.8
495,594 + CCNA_00479 0.81 -0.9
495,594 + CCNA_00479 0.81 -0.4
495,594 + CCNA_00479 0.81 +0.5
495,622 - CCNA_00479 0.90 -0.4
495,654 + -0.6
495,663 + +0.4
495,699 - -2.2
495,721 + +0.8
495,721 + -1.2
495,729 - -0.6
495,729 - -0.7
495,738 - -0.4
495,749 + -1.5
495,757 - -1.2
495,761 + -1.6
495,769 - -3.4
495,854 + CCNA_00480 0.10 -0.7
495,908 + CCNA_00480 0.14 +1.7
495,927 - CCNA_00480 0.16 -1.7
495,933 + CCNA_00480 0.16 -0.7
495,943 + CCNA_00480 0.17 +1.7
495,951 - CCNA_00480 0.17 -1.6
495,951 - CCNA_00480 0.17 +0.2
495,959 + CCNA_00480 0.18 +0.1
495,959 + CCNA_00480 0.18 +0.3
495,959 + CCNA_00480 0.18 +0.6
495,959 + CCNA_00480 0.18 -2.2
495,967 - CCNA_00480 0.19 -0.7
495,967 - CCNA_00480 0.19 -1.2
495,967 - CCNA_00480 0.19 -1.2
496,012 + CCNA_00480 0.22 -1.0
496,020 - CCNA_00480 0.23 +0.3
496,020 - CCNA_00480 0.23 -0.5
496,122 - CCNA_00480 0.31 +1.3
496,132 - CCNA_00480 0.31 -0.6
496,157 + CCNA_00480 0.33 +0.1
496,158 + CCNA_00480 0.33 +1.3
496,165 - CCNA_00480 0.34 -1.6
496,165 - CCNA_00480 0.34 +0.6
496,181 + CCNA_00480 0.35 -0.2
496,181 + CCNA_00480 0.35 -1.1
496,189 - CCNA_00480 0.36 -0.1
496,189 - CCNA_00480 0.36 -0.3
496,189 - CCNA_00480 0.36 -0.1
496,230 + CCNA_00480 0.39 +0.0
496,249 + CCNA_00480 0.40 -1.4
496,294 + CCNA_00480 0.44 +1.7
496,302 - CCNA_00480 0.44 -2.6
496,327 + CCNA_00480 0.46 +0.4
496,328 - CCNA_00480 0.46 -2.4
496,333 + CCNA_00480 0.47 -0.2
496,333 + CCNA_00480 0.47 -0.6
496,333 + CCNA_00480 0.47 +0.2
496,333 - CCNA_00480 0.47 +0.4
496,346 - CCNA_00480 0.48 -1.5
496,372 - CCNA_00480 0.50 -0.3
496,387 + CCNA_00480 0.51 -1.8
496,417 + CCNA_00480 0.53 +0.2
496,417 + CCNA_00480 0.53 -0.7
496,425 - CCNA_00480 0.54 -0.9
496,443 + CCNA_00480 0.55 -0.7
496,453 + CCNA_00480 0.56 +0.2
496,453 + CCNA_00480 0.56 +0.4
496,453 + CCNA_00480 0.56 -0.6
496,461 - CCNA_00480 0.57 +0.2
496,461 - CCNA_00480 0.57 -0.3
496,463 + CCNA_00480 0.57 -0.1
496,463 + CCNA_00480 0.57 -0.5
496,463 + CCNA_00480 0.57 -0.8
496,471 - CCNA_00480 0.58 -0.3
496,499 + CCNA_00480 0.60 +2.1
496,501 - CCNA_00480 0.60 -0.4
496,518 + CCNA_00480 0.61 +0.1
496,529 + CCNA_00480 0.62 -1.5
496,529 + CCNA_00480 0.62 -0.5
496,537 - CCNA_00480 0.63 -0.5
496,541 - CCNA_00480 0.63 -1.6
496,554 - CCNA_00480 0.64 -1.0
496,585 + CCNA_00480 0.66 +1.0
496,588 - CCNA_00480 0.67 -1.6
496,589 - CCNA_00480 0.67 -1.4
496,593 - CCNA_00480 0.67 +1.2
496,609 + CCNA_00480 0.68 -0.1
496,617 - CCNA_00480 0.69 +0.4
496,617 - CCNA_00480 0.69 +2.4
496,631 - CCNA_00480 0.70 -0.5
496,633 + CCNA_00480 0.70 -0.2

Or see this region's nucleotide sequence