Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00459

Experiment: PYE with Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00458 and CCNA_00459 are separated by 126 nucleotidesCCNA_00459 and CCNA_00460 are separated by 461 nucleotides CCNA_00458: CCNA_00458 - PTS system, N-acetylglucosamine-specific IIBC component, at 469,661 to 471,415 _00458 CCNA_00459: CCNA_00459 - Na+/H+ antiporter nhaA, at 471,542 to 472,783 _00459 CCNA_00460: CCNA_00460 - hypothetical protein, at 473,245 to 473,400 _00460 Position (kb) 471 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 471.248 kb on + strandat 471.302 kb on + strandat 471.302 kb on + strandat 471.302 kb on + strandat 471.305 kb on + strandat 471.312 kb on + strandat 471.312 kb on + strandat 471.312 kb on + strandat 471.312 kb on + strandat 471.318 kb on - strandat 471.362 kb on + strandat 471.370 kb on - strandat 471.409 kb on + strandat 471.409 kb on + strandat 471.425 kb on - strandat 471.444 kb on + strandat 471.456 kb on + strandat 471.501 kb on + strandat 471.501 kb on + strandat 471.501 kb on + strandat 471.509 kb on - strandat 471.535 kb on - strandat 471.540 kb on - strandat 471.544 kb on + strandat 471.561 kb on + strandat 471.648 kb on - strandat 471.710 kb on - strand, within CCNA_00459at 471.715 kb on + strand, within CCNA_00459at 471.769 kb on + strand, within CCNA_00459at 471.796 kb on + strand, within CCNA_00459at 471.831 kb on - strand, within CCNA_00459at 471.844 kb on + strand, within CCNA_00459at 471.860 kb on + strand, within CCNA_00459at 471.860 kb on + strand, within CCNA_00459at 471.865 kb on + strand, within CCNA_00459at 471.865 kb on + strand, within CCNA_00459at 471.870 kb on + strand, within CCNA_00459at 471.873 kb on - strand, within CCNA_00459at 471.875 kb on + strand, within CCNA_00459at 471.878 kb on - strand, within CCNA_00459at 471.883 kb on - strand, within CCNA_00459at 471.891 kb on + strand, within CCNA_00459at 471.899 kb on - strand, within CCNA_00459at 471.899 kb on - strand, within CCNA_00459at 471.899 kb on - strand, within CCNA_00459at 471.932 kb on + strand, within CCNA_00459at 471.932 kb on + strand, within CCNA_00459at 471.959 kb on - strand, within CCNA_00459at 471.962 kb on + strand, within CCNA_00459at 472.019 kb on + strand, within CCNA_00459at 472.045 kb on - strand, within CCNA_00459at 472.045 kb on - strand, within CCNA_00459at 472.049 kb on + strand, within CCNA_00459at 472.052 kb on - strand, within CCNA_00459at 472.054 kb on + strand, within CCNA_00459at 472.054 kb on + strand, within CCNA_00459at 472.054 kb on + strand, within CCNA_00459at 472.062 kb on - strand, within CCNA_00459at 472.062 kb on - strand, within CCNA_00459at 472.062 kb on - strand, within CCNA_00459at 472.067 kb on + strand, within CCNA_00459at 472.067 kb on + strand, within CCNA_00459at 472.077 kb on - strand, within CCNA_00459at 472.082 kb on + strand, within CCNA_00459at 472.105 kb on - strand, within CCNA_00459at 472.107 kb on + strand, within CCNA_00459at 472.115 kb on - strand, within CCNA_00459at 472.130 kb on - strand, within CCNA_00459at 472.132 kb on + strand, within CCNA_00459at 472.145 kb on - strand, within CCNA_00459at 472.234 kb on + strand, within CCNA_00459at 472.234 kb on + strand, within CCNA_00459at 472.234 kb on + strand, within CCNA_00459at 472.234 kb on + strand, within CCNA_00459at 472.242 kb on - strand, within CCNA_00459at 472.242 kb on - strand, within CCNA_00459at 472.248 kb on - strand, within CCNA_00459at 472.248 kb on - strand, within CCNA_00459at 472.265 kb on + strand, within CCNA_00459at 472.265 kb on - strand, within CCNA_00459at 472.276 kb on - strand, within CCNA_00459at 472.325 kb on - strand, within CCNA_00459at 472.329 kb on + strand, within CCNA_00459at 472.396 kb on + strand, within CCNA_00459at 472.402 kb on + strand, within CCNA_00459at 472.402 kb on + strand, within CCNA_00459at 472.422 kb on + strand, within CCNA_00459at 472.428 kb on + strand, within CCNA_00459at 472.435 kb on - strand, within CCNA_00459at 472.438 kb on + strand, within CCNA_00459at 472.438 kb on + strand, within CCNA_00459at 472.470 kb on - strand, within CCNA_00459at 472.470 kb on - strand, within CCNA_00459at 472.490 kb on - strand, within CCNA_00459at 472.531 kb on + strand, within CCNA_00459at 472.531 kb on + strand, within CCNA_00459at 472.531 kb on + strand, within CCNA_00459at 472.531 kb on + strand, within CCNA_00459at 472.531 kb on + strand, within CCNA_00459at 472.531 kb on + strand, within CCNA_00459at 472.531 kb on + strand, within CCNA_00459at 472.539 kb on - strand, within CCNA_00459at 472.539 kb on - strand, within CCNA_00459at 472.539 kb on - strand, within CCNA_00459at 472.541 kb on - strand, within CCNA_00459at 472.544 kb on + strand, within CCNA_00459at 472.547 kb on - strand, within CCNA_00459at 472.552 kb on - strand, within CCNA_00459at 472.595 kb on - strand, within CCNA_00459at 472.613 kb on + strand, within CCNA_00459at 472.613 kb on - strandat 472.661 kb on + strandat 472.661 kb on + strandat 472.669 kb on - strandat 472.669 kb on - strandat 472.669 kb on - strandat 472.669 kb on - strandat 472.669 kb on - strandat 472.684 kb on - strandat 472.698 kb on + strandat 472.730 kb on + strandat 472.730 kb on + strandat 472.738 kb on - strandat 472.748 kb on + strandat 472.778 kb on + strandat 472.784 kb on + strandat 472.813 kb on - strandat 472.875 kb on + strandat 472.889 kb on - strandat 472.960 kb on - strandat 472.977 kb on + strandat 472.992 kb on + strandat 472.992 kb on + strandat 472.999 kb on + strandat 473.000 kb on - strandat 473.047 kb on + strandat 473.125 kb on + strandat 473.161 kb on + strandat 473.169 kb on - strandat 473.205 kb on + strandat 473.205 kb on + strandat 473.205 kb on - strandat 473.227 kb on - strandat 473.227 kb on - strandat 473.234 kb on - strandat 473.250 kb on - strandat 473.252 kb on + strandat 473.260 kb on - strandat 473.275 kb on + strand, within CCNA_00460at 473.275 kb on + strand, within CCNA_00460at 473.275 kb on + strand, within CCNA_00460at 473.275 kb on + strand, within CCNA_00460at 473.275 kb on + strand, within CCNA_00460at 473.275 kb on + strand, within CCNA_00460at 473.278 kb on - strand, within CCNA_00460at 473.283 kb on - strand, within CCNA_00460at 473.283 kb on - strand, within CCNA_00460at 473.283 kb on - strand, within CCNA_00460at 473.304 kb on + strand, within CCNA_00460at 473.309 kb on + strand, within CCNA_00460at 473.309 kb on + strand, within CCNA_00460at 473.309 kb on + strand, within CCNA_00460at 473.317 kb on - strand, within CCNA_00460at 473.319 kb on + strand, within CCNA_00460at 473.322 kb on - strand, within CCNA_00460at 473.324 kb on + strand, within CCNA_00460at 473.327 kb on - strand, within CCNA_00460at 473.327 kb on - strand, within CCNA_00460at 473.345 kb on + strand, within CCNA_00460at 473.345 kb on + strand, within CCNA_00460at 473.345 kb on + strand, within CCNA_00460at 473.345 kb on + strand, within CCNA_00460at 473.353 kb on - strand, within CCNA_00460at 473.353 kb on - strand, within CCNA_00460at 473.388 kb on - strandat 473.392 kb on + strandat 473.474 kb on - strandat 473.501 kb on + strandat 473.501 kb on + strandat 473.509 kb on - strandat 473.563 kb on - strandat 473.573 kb on + strandat 473.586 kb on + strandat 473.588 kb on + strandat 473.596 kb on - strandat 473.637 kb on + strandat 473.656 kb on + strandat 473.664 kb on - strandat 473.665 kb on - strandat 473.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloramphenicol 0.0001 mg/ml
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471,248 + -1.0
471,302 + +2.3
471,302 + +1.2
471,302 + -1.1
471,305 + -1.8
471,312 + +0.6
471,312 + +0.8
471,312 + +0.3
471,312 + +0.6
471,318 - +0.9
471,362 + -0.6
471,370 - +0.5
471,409 + -0.4
471,409 + -0.7
471,425 - -0.9
471,444 + +0.9
471,456 + +1.7
471,501 + +1.2
471,501 + +1.1
471,501 + +0.3
471,509 - +1.4
471,535 - -0.3
471,540 - +0.1
471,544 + +1.0
471,561 + +2.2
471,648 - -1.4
471,710 - CCNA_00459 0.14 -1.6
471,715 + CCNA_00459 0.14 +2.3
471,769 + CCNA_00459 0.18 +1.6
471,796 + CCNA_00459 0.20 +1.2
471,831 - CCNA_00459 0.23 -0.3
471,844 + CCNA_00459 0.24 +2.0
471,860 + CCNA_00459 0.26 +1.7
471,860 + CCNA_00459 0.26 +1.6
471,865 + CCNA_00459 0.26 +1.1
471,865 + CCNA_00459 0.26 +0.8
471,870 + CCNA_00459 0.26 +1.3
471,873 - CCNA_00459 0.27 -1.4
471,875 + CCNA_00459 0.27 +1.6
471,878 - CCNA_00459 0.27 +1.0
471,883 - CCNA_00459 0.27 -0.1
471,891 + CCNA_00459 0.28 +1.5
471,899 - CCNA_00459 0.29 +2.7
471,899 - CCNA_00459 0.29 -1.7
471,899 - CCNA_00459 0.29 -1.7
471,932 + CCNA_00459 0.31 +1.6
471,932 + CCNA_00459 0.31 +1.0
471,959 - CCNA_00459 0.34 +0.0
471,962 + CCNA_00459 0.34 +2.3
472,019 + CCNA_00459 0.38 +2.3
472,045 - CCNA_00459 0.40 -0.0
472,045 - CCNA_00459 0.40 +1.2
472,049 + CCNA_00459 0.41 +1.7
472,052 - CCNA_00459 0.41 -0.3
472,054 + CCNA_00459 0.41 +2.3
472,054 + CCNA_00459 0.41 +0.7
472,054 + CCNA_00459 0.41 +1.9
472,062 - CCNA_00459 0.42 +2.1
472,062 - CCNA_00459 0.42 +1.7
472,062 - CCNA_00459 0.42 -0.8
472,067 + CCNA_00459 0.42 +1.1
472,067 + CCNA_00459 0.42 +0.8
472,077 - CCNA_00459 0.43 -1.3
472,082 + CCNA_00459 0.43 +0.0
472,105 - CCNA_00459 0.45 +0.7
472,107 + CCNA_00459 0.45 +1.5
472,115 - CCNA_00459 0.46 -1.0
472,130 - CCNA_00459 0.47 -0.0
472,132 + CCNA_00459 0.48 +1.6
472,145 - CCNA_00459 0.49 -0.4
472,234 + CCNA_00459 0.56 +0.7
472,234 + CCNA_00459 0.56 +1.9
472,234 + CCNA_00459 0.56 +1.7
472,234 + CCNA_00459 0.56 +1.8
472,242 - CCNA_00459 0.56 -1.0
472,242 - CCNA_00459 0.56 -0.7
472,248 - CCNA_00459 0.57 +0.5
472,248 - CCNA_00459 0.57 -1.2
472,265 + CCNA_00459 0.58 +1.8
472,265 - CCNA_00459 0.58 -0.4
472,276 - CCNA_00459 0.59 -2.9
472,325 - CCNA_00459 0.63 -0.1
472,329 + CCNA_00459 0.63 +2.1
472,396 + CCNA_00459 0.69 +1.4
472,402 + CCNA_00459 0.69 +1.9
472,402 + CCNA_00459 0.69 +2.0
472,422 + CCNA_00459 0.71 +2.5
472,428 + CCNA_00459 0.71 +2.1
472,435 - CCNA_00459 0.72 -1.2
472,438 + CCNA_00459 0.72 +2.2
472,438 + CCNA_00459 0.72 +2.1
472,470 - CCNA_00459 0.75 -0.0
472,470 - CCNA_00459 0.75 -1.3
472,490 - CCNA_00459 0.76 -1.4
472,531 + CCNA_00459 0.80 +1.6
472,531 + CCNA_00459 0.80 +2.1
472,531 + CCNA_00459 0.80 +1.7
472,531 + CCNA_00459 0.80 +1.9
472,531 + CCNA_00459 0.80 +1.6
472,531 + CCNA_00459 0.80 +1.3
472,531 + CCNA_00459 0.80 +2.1
472,539 - CCNA_00459 0.80 +1.3
472,539 - CCNA_00459 0.80 +1.2
472,539 - CCNA_00459 0.80 +1.9
472,541 - CCNA_00459 0.80 -0.2
472,544 + CCNA_00459 0.81 +1.5
472,547 - CCNA_00459 0.81 -0.4
472,552 - CCNA_00459 0.81 -0.7
472,595 - CCNA_00459 0.85 +0.9
472,613 + CCNA_00459 0.86 +2.1
472,613 - +0.7
472,661 + +1.6
472,661 + +1.9
472,669 - +1.6
472,669 - +0.3
472,669 - -0.4
472,669 - -1.0
472,669 - -1.3
472,684 - +0.6
472,698 + -0.0
472,730 + +0.7
472,730 + +0.7
472,738 - -1.0
472,748 + +1.0
472,778 + +0.5
472,784 + +0.3
472,813 - -0.4
472,875 + +1.8
472,889 - -1.6
472,960 - +0.7
472,977 + +1.3
472,992 + +1.3
472,992 + +1.5
472,999 + +0.2
473,000 - -0.8
473,047 + -0.8
473,125 + +0.4
473,161 + -0.1
473,169 - +1.5
473,205 + -1.0
473,205 + -1.5
473,205 - -1.2
473,227 - +0.7
473,227 - -1.5
473,234 - +0.5
473,250 - -0.5
473,252 + +0.1
473,260 - -0.5
473,275 + CCNA_00460 0.19 -0.0
473,275 + CCNA_00460 0.19 +1.1
473,275 + CCNA_00460 0.19 +0.8
473,275 + CCNA_00460 0.19 -1.4
473,275 + CCNA_00460 0.19 -0.3
473,275 + CCNA_00460 0.19 +2.1
473,278 - CCNA_00460 0.21 -1.1
473,283 - CCNA_00460 0.24 -0.4
473,283 - CCNA_00460 0.24 +0.4
473,283 - CCNA_00460 0.24 +1.1
473,304 + CCNA_00460 0.38 -1.0
473,309 + CCNA_00460 0.41 -1.6
473,309 + CCNA_00460 0.41 -1.2
473,309 + CCNA_00460 0.41 -0.6
473,317 - CCNA_00460 0.46 -1.2
473,319 + CCNA_00460 0.47 -2.0
473,322 - CCNA_00460 0.49 +0.5
473,324 + CCNA_00460 0.51 +0.3
473,327 - CCNA_00460 0.53 -0.4
473,327 - CCNA_00460 0.53 -0.6
473,345 + CCNA_00460 0.64 +0.0
473,345 + CCNA_00460 0.64 -1.2
473,345 + CCNA_00460 0.64 -1.0
473,345 + CCNA_00460 0.64 +0.2
473,353 - CCNA_00460 0.69 -0.7
473,353 - CCNA_00460 0.69 -1.1
473,388 - -0.7
473,392 + -0.9
473,474 - +1.0
473,501 + -0.8
473,501 + -0.8
473,509 - -0.4
473,563 - +0.3
473,573 + +0.1
473,586 + -0.4
473,588 + +0.5
473,596 - -1.0
473,637 + +0.7
473,656 + +0.3
473,664 - -1.5
473,665 - +0.3
473,669 - -2.2

Or see this region's nucleotide sequence